PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G15310.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 171aa    MW: 18835 Da    PI: 10.5098
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G15310.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-091375656
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                     +ft+ ++ e+e+  ++  n  p ++ ++ LA+k            ++ +qV +WFqNrR+ ++
  OBART06G15310.2 13 RFTQAEVAEMEARLQQlnNAIPHRSVIQALADKFtssparsgkvAVQPKQVWNWFQNRRYSHR 75
                     69*************776999***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0056781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-81280IPR009057Homeodomain-like
SuperFamilySSF466891.5E-111278IPR009057Homeodomain-like
PfamPF000464.6E-71375IPR001356Homeobox domain
PROSITE profilePS5007110.1391377IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGRPPSTGGP AFRFTQAEVA EMEARLQQLN NAIPHRSVIQ ALADKFTSSP ARSGKVAVQP  60
KQVWNWFQNR RYSHRSRSSR GPPTLVQTKM LPTGSDEHKS PPFRAMPSAS AHSGSPSGKG  120
SLESGQVEFE AKSARDGAWY DVAAFLSHRS FESGDPYEFA FLDLEPRKMN G
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1042820.0AK104282.1 Oryza sativa Japonica Group cDNA clone:001-006-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644221.11e-109protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ74e-48SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0D3GGT01e-122A0A0D3GGT0_9ORYZ; Uncharacterized protein
STRINGOS06T0485100-031e-108(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.33e-40sequence-specific DNA binding transcription factors;sequence-specific DNA binding