PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G16360.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 259aa    MW: 28016.5 Da    PI: 7.3569
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G16360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.41.8e-182062345
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     i+ k +rqvtfskRr g++KKA+E+S+L +a va++ fs+ g+
  OBART06G16360.1 20 IDGKEKRQVTFSKRRRGLFKKASEISTLSGASVAIVSFSKAGN 62
                     78899**********************************9985 PP
2SRF-TF77.51e-2468115249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                      ri+n+ +rqvtfskRrng++KKA+ELS+LC+a vav+ fss g+++ +
  OBART06G16360.1  68 RIDNSGRRQVTFSKRRNGLFKKASELSTLCGASVAVVAFSSAGNVFAF 115
                      8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-131062IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-171062IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.2031061IPR002100Transcription factor, MADS-box
CDDcd001209.43E-191162No hitNo description
PfamPF003198.1E-182061IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.86659119IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-206181IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-2462129IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-2663118IPR002100Transcription factor, MADS-box
PfamPF003194.2E-2468115IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-208196IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-2096117IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRPRGGTSK GKQKIEMCCI DGKEKRQVTF SKRRRGLFKK ASEISTLSGA SVAIVSFSKA  60
GNRIEIRRID NSGRRQVTFS KRRNGLFKKA SELSTLCGAS VAVVAFSSAG NVFAFGQPTV  120
DAVVRRFDPL HADGADPAPA AVEDGGGGGD DVVVADPEEL DALRRAEEQT KAQVAAEQAR  180
MRDVGDKVTQ AMAGRTLWWE ADVEALGEAE LPEFVRALER LRDSVRRHAS TLASTATPLP  240
PPPEQEEEVP ELDVSDYSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039510.0AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642334.11e-101agamous-like MADS-box protein AGL62
TrEMBLA0A0D3GH610.0A0A0D3GH61_9ORYZ; Uncharacterized protein
STRINGOBART06G16360.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-15AGAMOUS-like 62