PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G16380.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 307aa    MW: 32799 Da    PI: 4.2107
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G16380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.52.4e-27181237257
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ +C ++k+ver++ dp+++  tY+g H 
  OBART06G16380.1 181 PDSWAWRKYGQKPIKGSPYPRGYYRCSSNkNCAARKQVERCRLDPSFLLLTYTGAHY 237
                      599*************************99**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27166237IPR003657WRKY domain
PROSITE profilePS5081126.613175241IPR003657WRKY domain
SuperFamilySSF1182901.22E-23175238IPR003657WRKY domain
SMARTSM007741.1E-29180240IPR003657WRKY domain
PfamPF031065.1E-22182236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDGDAWWYAG GGGGGGSNNW DLGAVVRFGC GGGRVSPAAA LLGEAWEYDD DPFSSFLAPP  60
MTAQQAALPA VWEEGDDGDA AWMAPLPGLQ TGGGWGDQAP MVVDELCGAL VVAPPPPPKQ  120
QEVLQVQQQP PSADNTQPTT DQQGSGGDGE STRAGGSRSA RRKKKQTRKE VVRVAASGPA  180
PDSWAWRKYG QKPIKGSPYP RGYYRCSSNK NCAARKQVER CRLDPSFLLL TYTGAHYGEP  240
EPRPVADHAA ARLLHGEDDA EAELQVEEDD MAIDDEDDDD VADETISTVP WGTPISDAII  300
AASYEWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-151822421675WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039510.0AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881961.11e-163WRKY transcription factor 22-like
TrEMBLA0A0D3GH630.0A0A0D3GH63_9ORYZ; Uncharacterized protein
STRINGOBART06G16380.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-27WRKY DNA-binding protein 27