PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G16690.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1279aa    MW: 144880 Da    PI: 6.4859
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G16690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07126148527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C +++r+G CkyG +C+F+H+p
  OBART06G16690.1 126 DCLHYLRFGRCKYGMNCRFNHPP 148
                      699******************96 PP
2zf-CCCH345.1e-11188213126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G++CkF+H+
  OBART06G16690.1 188 PGTGLCSYYMNRGICKFGSNCKFHHP 213
                      5799*********************8 PP
3zf-CCCH27.17.4e-09661686126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C+++ ++G Ck+G +C ++H+
  OBART06G16690.1 661 PGEPDCSYYVKFGSCKFGISCVYNHP 686
                      5789*********************9 PP
4zf-CCCH28.13.5e-09706732127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++ ++G Ck+G +C+F+H+p
  OBART06G16690.1 706 PGEPDCSYYVKFGSCKFGMNCRFNHPP 732
                      5789*********************96 PP
5zf-CCCH322.1e-10775798326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      t lC++++  G+Ck+G +CkF H+
  OBART06G16690.1 775 TGLCSYYMNRGICKFGTNCKFDHP 798
                      779********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.45180108IPR000571Zinc finger, CCCH-type
SMARTSM003560.7680107IPR000571Zinc finger, CCCH-type
PfamPF146081.385106No hitNo description
SMARTSM003560.015121148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723121149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-5125150IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-5126148IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5187214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939187215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6188214IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8189213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4190212IPR000571Zinc finger, CCCH-type
SMARTSM005431.2383625IPR003890MIF4G-like, type 3
SuperFamilySSF483712.45E-21409563IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.40.1802.8E-22410542IPR016021MIF4G-like domain
PfamPF028544.5E-16411543IPR003890MIF4G-like, type 3
SMARTSM003562.7E-4660687IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648660688IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-6662686IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859705733IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4705732IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6707732IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065772800IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5773799IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4774799IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4775797IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7775798IPR000571Zinc finger, CCCH-type
SuperFamilySSF483713.74E-279491108IPR016024Armadillo-type fold
SMARTSM005438.2E-49531205IPR003890MIF4G-like, type 3
PfamPF028547.6E-189541102IPR003890MIF4G-like, type 3
Gene3DG3DSA:1.25.40.1808.0E-279541105IPR016021MIF4G-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1279 aa     Download sequence    Send to blast
MMQILCECCN SDHRSSSTPM ATTSSSAADP AAAAISPTPS QQHASSTVTT LDDRRPAGTS  60
SSAGETEPKA AVEPQEYPRR PGWPDCSYYV EFGSCKFGMG CLYNHPAKHA GGCDKLEHPQ  120
QPGEHDCLHY LRFGRCKYGM NCRFNHPPDR VPQQQVYFPW KACHCHHSEG KSEAEQVKLN  180
FIGLPLRPGT GLCSYYMNRG ICKFGSNCKF HHPNPGSGHE KWDDSLQTNQ ISSGVNIYSV  240
LDRGELNEQP VPSKDGFQRG NSCFQPAEQI RYTRDQLFQL RETVDVPKDI MKLIQDINVE  300
LRGEDESWAP NETNYVPALS YKRFEETDSH DWHSRSSQNP VVVEEEKFRD DTREAKEPYA  360
LGWKQKQFNN QDQKSFQSDS KTQASPTLAL HKAEDPWSIR RGTTPEKYKV LKTYTKLIDT  420
REDVIDLTLE KAVAEPTLCP MYAQLCSYLN ENLTAFPPKD THCEQITFKQ ALSDKCQQAF  480
EIARNVRADI YKLTGRDQEM ERRDKERLVK HQILGKIRLI RDLLKQKMVP DKIVHQIAQA  540
VTDCENFHFE PLENVDLLNI IFDGVLDSVL AGTGANKIVN AIIGTEKCSI ASNDWSTSTS  600
DESAAASPSR VVERLAASSM PQDDDWFWGP TPVVVGETTS KPQPPVAGKT KKVEEQQPRR  660
PGEPDCSYYV KFGSCKFGIS CVYNHPDPRR QHGADDKKPE QFPRRPGEPD CSYYVKFGSC  720
KFGMNCRFNH PPRMPVPPQQ EYFSGNACHC HHSEGKSKVK QVKLNVLGLP LRAGTGLCSY  780
YMNRGICKFG TNCKFDHPDP GSDHEKWVVS SNANQVSSQV NIYSVLDRGE SNERTVTSEE  840
VHQNVDVPKD ILKCCQDINV ELNGEEKIWG FGAEKDHVQT PSYKRFDATD SRDWHSQSAQ  900
THWEQKFWDN FSEAKEPYAL GWKQEKFNKH DQSSFHFDSK DQRGIISGKD EVLKTLKSTL  960
NTFTPKMFDL QKGQLIETRI TSADILKDVI NLIFEKVVAE PAFYSTYAQI CTYLNQNLTP  1020
FPPEDCGEEI TFKQALSSKC QEIFESARTV RAEIDKLIGQ DREMEQRDKE RVVKLETLAN  1080
IHFIRALLKK KLITNKIIDH IVHAVMECGR FRFEPLGKVD LLNIIFEGML DSDSAGAESN  1140
ICVNAMIGGN KSSIAENDVE MTCKNVNRQN EEAILQKSYN EVPNNSMDPQ KNYADGAFSY  1200
LVGNEKPTNF ESSVRISRAG CSISEIMELV VDAGAVEGSD EHFIATLLFI KPEYREIFLT  1260
LDTRQGRLGW LKRMYKVKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iul_A1e-10950110720182Eukaryotic translation initiation factor 4 gamma 2
4iul_B1e-10950110720182Eukaryotic translation initiation factor 4 gamma 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015100.0AK101510.1 Oryza sativa Japonica Group cDNA clone:J033045L14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641849.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_025882269.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ5Z5Q30.0C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0D3GH940.0A0A0D3GH94_9ORYZ; Uncharacterized protein
STRINGOBART06G16690.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143301322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.15e-32zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]