PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G18200.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 144aa    MW: 15863.8 Da    PI: 5.8952
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G18200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.77.9e-3312100299
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y+++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll+
  OBART06G18200.1  12 FVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLLR 96 
                      9****************************************************************999.........***************** PP

                      XXXX CS
     HSF_DNA-bind  96 kikr 99 
                      +i++
  OBART06G18200.1  97 NIHQ 100
                      *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.6E-508101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-37999IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.31E-33999IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.9E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.5E-2912100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MAAAAGGGAA PFVWKTYRMV EDPGTDGVIG WGKGNNSFVV ADPFVFSQTL LPAHFKHNNF  60
SSFVRQLNTY GFRKVDPDRW EFAHASFLRG QTHLLRNIHQ GGTTLNELLP ENYHEGGTTL  120
DELLLLENGV QTSQDEVPPG TCCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-24510612125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485381e-117AK248538.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf61l22, mRNA sequence.
GenBankAK3544351e-117AK354435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007F06.
GenBankAK3581361e-117AK358136.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069K14.
GenBankAK3703991e-117AK370399.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2110B13.
GenBankHM4460411e-117HM446041.1 Hordeum vulgare subsp. vulgare heat shock factor C2b (HsfC2b) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965592.15e-62heat stress transcription factor C-2b
SwissprotQ0DBL65e-61HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A0D3GHR31e-104A0A0D3GHR3_9ORYZ; Uncharacterized protein
STRINGOBART06G18200.11e-104(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.19e-44heat shock transcription factor C1