PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G18620.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 512aa    MW: 52654.9 Da    PI: 6.6702
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G18620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.2e-084344721854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +Fe+   +yp+ +e+  LA++ gL+ +qV++WF N R +
  OBART06G18620.1 434 MFENflRPYPKDSEKDMLAARSGLSRSQVSNWFINARVR 472
                      57766689*****************************88 PP
2BELL224e-083053701072
             BELL  10 akLlslleeVdkrYkqyveqlqtvissFeav...aglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +L +ll+ Vd++ +q+ve++q  ++ F+ +   +g g   + +++A +a++  +r ++ ++++q+
  OBART06G18620.1 305 QRLRKLLQLVDEKCNQCVEEMQSTAARFNSMvrsTGGGGGGLTAAFAGRAVAAAYRRVRRRVMGQL 370
                      578899999*******************9873446889999*********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.7E-12240366IPR006563POX domain
PROSITE profilePS5007111.791413476IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-25415488IPR009057Homeodomain-like
SMARTSM003895.4E-7416480IPR001356Homeobox domain
CDDcd000861.03E-11416477No hitNo description
SuperFamilySSF466891.88E-15416485IPR009057Homeodomain-like
PfamPF059201.3E-15433472IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MSTSSNPSYH QLGLDAISCC FVAGDGGAEA AAPFFGFGFG DVDGEFLVAS PVAAVGDELA  60
CAVPLRRPQG SVSEEEVNAA AVAAAAAGGA ESCSTVHSVL GSVEFGCGTS SGVTIAQASR  120
MGRLAGEAPC GDAGGGGWIY GGSGIAPLHG AYYLSGFSSG AGAGFLSPFA ASSVAAAAPA  180
ASELSLRLGA TKSAGAGAAL FHPTHGDGAA AAAAGELRQA YHSRAPPHFS QVVSRSAVLA  240
HVAQELLNGF VACLLQDVAA DAASGVDGGE ASPALSSGFS ARITTAPTED ASPGSGGARW  300
AAEAQRLRKL LQLVDEKCNQ CVEEMQSTAA RFNSMVRSTG GGGGGLTAAF AGRAVAAAYR  360
RVRRRVMGQL VAAATARSSS SAAAAALEEK ERSWESSFIQ KHWAMQQLRR GDQQSWRPQR  420
GLPEKSVAVL KAWMFENFLR PYPKDSEKDM LAARSGLSRS QVSNWFINAR VRLWKPMIED  480
MYEELKKTSG GSDGAAEIEH LSSKDVLSLE RL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037140.0AP003714.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0656E03.
GenBankAP0037620.0AP003762.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0456F09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641753.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_015641754.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_025882414.10.0BEL1-like homeodomain protein 1 isoform X1
TrEMBLA0A0D3GHW50.0A0A0D3GHW5_9ORYZ; Uncharacterized protein
STRINGOBART06G18620.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.14e-49homeobox gene 1