PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G18790.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 251aa    MW: 27309.7 Da    PI: 4.3056
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G18790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind77.52.2e-2439112274
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks 74 
                      Fl k++e++ed++++ ++sw  +  nsfvv+d++ fa  +Lp +Fkh +f+SF+RQLn+YgF+k  + +  +++
  OBART06G18790.1  39 FLVKTFEMVEDPATDAVVSWGgAARNSFVVWDPHAFAAGLLPLHFKHAKFSSFLRQLNTYGFRKEARAQLLDME 112
                      9********************9899***************************************9887765444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-2835145IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-2036105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-2436115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-2139144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-153962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-157890IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-1591103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDYSTVKQEE VEVVVLDGEE EAAAPLPAAM GVGAVVAPFL VKTFEMVEDP ATDAVVSWGG  60
AARNSFVVWD PHAFAAGLLP LHFKHAKFSS FLRQLNTYGF RKEARAQLLD MERRVRGTER  120
RQEQCTAFLA RALRSPDVLH NIARRHAAAA PVEGKKRRML ADDDDGLTFE ALALAAAADT  180
SHSTGGAVIT DMIWYELLGE EQAEIDIEVD QLVAAAAAAN TASEAEPWEE MGEEEVQELV  240
QQIDCLASPS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-152714518129Heat shock factor protein 1
5d5v_B2e-152714518129Heat shock factor protein 1
5d5v_D2e-152714518129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054560.0AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881831.17e-59putative heat stress transcription factor A-6a
RefseqXP_025881832.17e-59putative heat stress transcription factor A-6a
RefseqXP_025881833.17e-59putative heat stress transcription factor A-6a
SwissprotQ5Z6A47e-60HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLA0A0D3GHY30.0A0A0D3GHY3_9ORYZ; Uncharacterized protein
STRINGOBART06G18790.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-28heat shock transcription factor A2