PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G20890.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 224aa    MW: 24903.2 Da    PI: 8.2559
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G20890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-055776120
                     EEETTTTEEESSHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                     ++Cp C k+F+r  n++ H+
  OBART06G20890.1 57 FSCPVCYKTFNRYNNMQMHM 76
                     89*****************9 PP
2zf-C2H215.16.6e-05141163123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  + + ++H +++
  OBART06G20890.1 141 FMCRKCGKAFAVRGDWRTHEKNC 163
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.72E-55379No hitNo description
Gene3DG3DSA:3.30.160.603.4E-65776IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.7435784IPR007087Zinc finger, C2H2
SMARTSM003550.455779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6125161No hitNo description
Gene3DG3DSA:3.30.160.605.3E-6137161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808141161IPR007087Zinc finger, C2H2
SMARTSM0035549141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MQVEEEGGEE EDEDEAAAAA ATATLPLGCA SIGIGKLTKG QYWIPTPSQI LIGPTQFSCP  60
VCYKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTAMLR LPCYCCAAGC RNNIDHPRAR  120
PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCA CGSDFKHKRS  180
LKDHIRAFGR GHAACGIDSF DDLDADDDPS SDLDHASASA SRVG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711040.0AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642156.11e-169zinc finger protein WIP2
SwissprotQ9SVY11e-122ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D3GIM71e-168A0A0D3GIM7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0Q0381e-167A0A0E0Q038_ORYRU; Uncharacterized protein
TrEMBLQ69WZ11e-167Q69WZ1_ORYSJ; Os06g0612300 protein
STRINGORUFI06G22350.11e-168(Oryza rufipogon)
STRINGOS06T0612300-011e-168(Oryza sativa)
STRINGOBART06G20890.11e-169(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]