PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G22190.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 1800aa MW: 196678 Da PI: 7.2048

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G22190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.6e-07	1671	1692	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tG+C+ G+rCk +H++ OBART06G22190.1 1671 CPVFEATGECPLGSRCKLHHPK 1692 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.037	1583	1612	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.9	1583	1611	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.235	1616	1642	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0094	1616	1641	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.76	1643	1670	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.7E-5	1643	1669	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2	1670	1692	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.409	1671	1693	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1800 aa Download sequence Send to blast
MVHEGFSIHS DSKVSRKIQM PTQMALPGSP HGTSAGYARR APQKVAPSRV SVWHRIEENP 60 AMYEPSSLPP HMPKEVHVSP CKSNNVAPAS KELASVISVD CRGKSADGND GDSNTGTKKN 120 PVKKNEKVLA SVLVKPPMEP KEKEVAAKKM LKKPDKVQKN AVHSNIRSLV STPCPGAGAK 180 KVKKIVIKKI VRKINGKGNQ NSTPVVSEKR DGIDANACEK EEGEITTSSF EKDVISAHDP 240 IAVSDTAGFG NAVNDQKQKN TNFTNPSGRN AASANGSMEI PDPPNGSGSA HPGKEEVLSP 300 KNPVDNSNAS LVVEPIEVLE KSGTEHPRKE HDMSSIGSGV NDAFADANNH TQKEVGEMNV 360 AVAINSVRVS DAREVPRCDD SSMEESKVPK DVDANNAVCM DGVASNCDTT EVCGIEDARR 420 ECGKKLIGIN DEKAFLLNNS ARSSSTSDTC MTAVEGAQKK EGIILTGSSE KSIGFLGDSV 480 GTHRTTEFGA SKDAPNEGDD MPSHPSEKDF MSLNSCGGLN YTEVSEKEDI QEKEDRVPME 540 SIVACTSSGN EDIQVNEGRK PMELSEANAF SGSGDSQGKE CRIPMGSSET NTSSVNHVNA 600 SNEKDFSLSE DTQKKESHRP IESCENTTFE IMHHEEAPST EEVITGVSLG RKVVEGPTRS 660 NERCSGARGN SATTLKFGLA CATEDNQMED LLNNRTALNE TDDPLDAEDS PVFVPPSSRN 720 VESTYASPLY DPMEDSTSDG ILNIGLGRNT TSKAAELLDL HRDHISSEND SLIHSRGTSS 780 VSGNREQSVP TALTLGSNIY FSSAETDDWP EERHELVVEG QQGLTVETTS KLDSPGKIEV 840 LNGAGFISTG IQNWLSLPPS INSMEMSGQF LNNGFTVSKG RLGLDQSMDD ATSVSQDHDI 900 AQDMDQRGSE DAFFSQDHSI RLCGSDLPHS HLLAPKESSM NGEDQSGIVL TGLHPSSSVN 960 VLGHYGYQTD DIPVDKLNKL PSALKSSDAM DADQVSSQVC VNPDHTNDSN TENAGVESNA 1020 KQDLLSSWIE AIVSEAKKEH PPCKSTPLTV GLPDKLLEPK DSDRKTLLET VVPSAVKSPQ 1080 INFASSTLQK VAPKQVTLPS SSREPTRANQ NARHRTWHRG NIASSSSSLH ASQPLGLPPK 1140 LPPKKNDKAQ NSYIRKGNAL IRNPSNGNHP HSSTGHDTQN NLNKPVVRRS MNFVRKADTK 1200 DLANSNISVE RPKTPPLPLH TKSSCPTTLL EPLSQTLQKQ HGHEAEKEDL TGQPKSGVDN 1260 SSIKSAQKSE PSDPSKVVYV RPKSNQLVAA QRQHPIDLVN SPTDKILSLQ APIASDLYLK 1320 KRKNQIVLSS CSPSDGLSTK ETLPAENSNS EEKKDLMIAC SISGIPGVKD RPQKALQTTN 1380 NVGRFSHVWT LNGQQPQRKG FMGSSHMNAF PRILPWKRKI FCKNFRSSHM SNVSSIRIVR 1440 KLLQTRKRDM IYTVSTDGFS LRKSGVLSVG GSSLKWSRSL EKRSQKVNKE ATLALAEVER 1500 RKREKRKRQS LHDKGDHQFE SVTGNQLRNS CQSSSDLRKP STCNEYVRVS KGNQLVRNPK 1560 NVIRMLASDK VRWSLHTVRS RLAKKQQYCQ FFTRFGECKK PRGKCPYIHD RAKVLPERMP 1620 DCSYFLRGLC TNIACPYRHV KVNLNAPVCE DFLKGYCAYG DECHKKHSYV CPVFEATGEC 1680 PLGSRCKLHH PKSKVKSKSR RPDFLQNSSW GRYFDASIDH QDETRKVSLD EDEREKPQRV 1740 FSDGDLGFIS LDDDADEDVT ALDASDDIPL MELDSGDLSA QTDNLDALIK PLRIMRTARV

Sequence ? help Back to Top

Protein Sequence Length: 1800 aa Download sequence Send to blast

MVHEGFSIHS DSKVSRKIQM PTQMALPGSP HGTSAGYARR APQKVAPSRV SVWHRIEENP  60
AMYEPSSLPP HMPKEVHVSP CKSNNVAPAS KELASVISVD CRGKSADGND GDSNTGTKKN  120
PVKKNEKVLA SVLVKPPMEP KEKEVAAKKM LKKPDKVQKN AVHSNIRSLV STPCPGAGAK  180
KVKKIVIKKI VRKINGKGNQ NSTPVVSEKR DGIDANACEK EEGEITTSSF EKDVISAHDP  240
IAVSDTAGFG NAVNDQKQKN TNFTNPSGRN AASANGSMEI PDPPNGSGSA HPGKEEVLSP  300
KNPVDNSNAS LVVEPIEVLE KSGTEHPRKE HDMSSIGSGV NDAFADANNH TQKEVGEMNV  360
AVAINSVRVS DAREVPRCDD SSMEESKVPK DVDANNAVCM DGVASNCDTT EVCGIEDARR  420
ECGKKLIGIN DEKAFLLNNS ARSSSTSDTC MTAVEGAQKK EGIILTGSSE KSIGFLGDSV  480
GTHRTTEFGA SKDAPNEGDD MPSHPSEKDF MSLNSCGGLN YTEVSEKEDI QEKEDRVPME  540
SIVACTSSGN EDIQVNEGRK PMELSEANAF SGSGDSQGKE CRIPMGSSET NTSSVNHVNA  600
SNEKDFSLSE DTQKKESHRP IESCENTTFE IMHHEEAPST EEVITGVSLG RKVVEGPTRS  660
NERCSGARGN SATTLKFGLA CATEDNQMED LLNNRTALNE TDDPLDAEDS PVFVPPSSRN  720
VESTYASPLY DPMEDSTSDG ILNIGLGRNT TSKAAELLDL HRDHISSEND SLIHSRGTSS  780
VSGNREQSVP TALTLGSNIY FSSAETDDWP EERHELVVEG QQGLTVETTS KLDSPGKIEV  840
LNGAGFISTG IQNWLSLPPS INSMEMSGQF LNNGFTVSKG RLGLDQSMDD ATSVSQDHDI  900
AQDMDQRGSE DAFFSQDHSI RLCGSDLPHS HLLAPKESSM NGEDQSGIVL TGLHPSSSVN  960
VLGHYGYQTD DIPVDKLNKL PSALKSSDAM DADQVSSQVC VNPDHTNDSN TENAGVESNA  1020
KQDLLSSWIE AIVSEAKKEH PPCKSTPLTV GLPDKLLEPK DSDRKTLLET VVPSAVKSPQ  1080
INFASSTLQK VAPKQVTLPS SSREPTRANQ NARHRTWHRG NIASSSSSLH ASQPLGLPPK  1140
LPPKKNDKAQ NSYIRKGNAL IRNPSNGNHP HSSTGHDTQN NLNKPVVRRS MNFVRKADTK  1200
DLANSNISVE RPKTPPLPLH TKSSCPTTLL EPLSQTLQKQ HGHEAEKEDL TGQPKSGVDN  1260
SSIKSAQKSE PSDPSKVVYV RPKSNQLVAA QRQHPIDLVN SPTDKILSLQ APIASDLYLK  1320
KRKNQIVLSS CSPSDGLSTK ETLPAENSNS EEKKDLMIAC SISGIPGVKD RPQKALQTTN  1380
NVGRFSHVWT LNGQQPQRKG FMGSSHMNAF PRILPWKRKI FCKNFRSSHM SNVSSIRIVR  1440
KLLQTRKRDM IYTVSTDGFS LRKSGVLSVG GSSLKWSRSL EKRSQKVNKE ATLALAEVER  1500
RKREKRKRQS LHDKGDHQFE SVTGNQLRNS CQSSSDLRKP STCNEYVRVS KGNQLVRNPK  1560
NVIRMLASDK VRWSLHTVRS RLAKKQQYCQ FFTRFGECKK PRGKCPYIHD RAKVLPERMP  1620
DCSYFLRGLC TNIACPYRHV KVNLNAPVCE DFLKGYCAYG DECHKKHSYV CPVFEATGEC  1680
PLGSRCKLHH PKSKVKSKSR RPDFLQNSSW GRYFDASIDH QDETRKVSLD EDEREKPQRV  1740
FSDGDLGFIS LDDDADEDVT ALDASDDIPL MELDSGDLSA QTDNLDALIK PLRIMRTARV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1499	1504	RRKREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003573	0.0	AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643043.1	0.0	uncharacterized protein LOC4341610 isoform X2
TrEMBL	A0A0D3GJ17	0.0	A0A0D3GJ17_9ORYZ; Uncharacterized protein
STRING	OBART06G22190.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6703	10	10