PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G22770.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 211aa MW: 22959.1 Da PI: 11.4674

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G22770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.8	4.2e-07	110	152	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+ L++e+ l+ + +l +e+ OBART06G22770.1 110 RPRKKMRLPEIQQLVRSLTMENDGLREEMVALQRACTALSKEN 152 89***********************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-4	110	148	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MGEEGRVSRR VVCHVQVVGR WARGSPGVSP RLQRRLRLRL RRVDERRRGR GLLLSTATTA 60 AGGDGDGGDY AHGRAHPFSG QAAAAAALVG PAGRRQLILP TPPPRPAGQR PRKKMRLPEI 120 QQLVRSLTME NDGLREEMVA LQRACTALSK ENCKLETRLE KSSKRNGTKS EGQQARPQPD 180 EPAAKQESQN GFVLPDLNLP VEDMAADGSA P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	115	RPRKKMR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	9e-92	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644355.1	6e-80	uncharacterized protein LOC4341662
TrEMBL	A0A0D3GJ93	1e-148	A0A0D3GJ93_9ORYZ; Uncharacterized protein
STRING	OBART06G22770.1	1e-149	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51