PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G22770.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 194aa MW: 19882.3 Da PI: 6.6406

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G22770.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22	3.6e-07	93	135	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+ L++e+ l+ + +l +e+ OBART06G22770.2 93 RPRKKMRLPEIQQLVRSLTMENDGLREEMVALQRACTALSKEN 135 89***********************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.6E-4	93	131	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MTAADAEAGG GPGVAPASPL DYSGGSGSGS AASTSGGEDG AFCSPPPPPP PVVTATAATT 60 PTAAPTPSPA KVGPAGRRQL ILPTPPPRPA GQRPRKKMRL PEIQQLVRSL TMENDGLREE 120 MVALQRACTA LSKENCKLET RLEKSSKRNG TKSEGQQARP QPDEPAAKQE SQNGFVLPDL 180 NLPVEDMAAD GSAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	98	RPRKKMR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	2e-92	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644355.1	8e-86	uncharacterized protein LOC4341662
TrEMBL	A0A0D3GJ94	1e-133	A0A0D3GJ94_9ORYZ; Uncharacterized protein
STRING	OGLUM06G23990.1	1e-122	(Oryza glumipatula)