PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G23420.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 287aa    MW: 31335 Da    PI: 9.2251
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G23420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.94.4e-12129185155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OBART06G23420.1 129 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 185
                      57*******************5444.2455536655.779999**************98 PP
2AP223.41.4e-07228261137
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfg 37 
                      s y+GV+++++ grW A+I  +     +k  +lg+f 
  OBART06G23420.1 228 SIYRGVTRHHQHGRWQARIGSVAG---NKDLYLGTFS 261
                      57****************888532...5*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-15129194IPR016177DNA-binding domain
PfamPF008471.5E-9129185IPR001471AP2/ERF domain
CDDcd000187.39E-18129195No hitNo description
Gene3DG3DSA:3.30.730.101.6E-12130194IPR001471AP2/ERF domain
SMARTSM003801.4E-21130199IPR001471AP2/ERF domain
PROSITE profilePS5103217.477130193IPR001471AP2/ERF domain
PRINTSPR003673.9E-5131142IPR001471AP2/ERF domain
PRINTSPR003673.9E-5175195IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-6228262IPR016177DNA-binding domain
PROSITE profilePS510328.913229261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-5229262IPR001471AP2/ERF domain
SMARTSM003800.001229274IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAL STTSAPPLGE EGPAEGAPKM EDFLGGLGGG  60
GGAVAAVPAA APEDQLSCGE LGSIAAGFLR RYPAPENAGG VTIAMATDAA AELADPARRT  120
AETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA  180
LKYWGPTTTT NFPVANYETE LEEMKSMTRQ EFVLSLRRKS SGFSRGASIY RGVTRHHQHG  240
RWQARIGSVA GNKDLYLGTF SKLASTFSNT YTQTLRPLRC MVVGKFS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019590.0AK101959.1 Oryza sativa Japonica Group cDNA clone:J033075O07, full insert sequence.
GenBankHQ8588430.0HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641575.11e-172AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ39e-97AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D3GJG80.0A0A0D3GJG8_9ORYZ; Uncharacterized protein
STRINGOBART06G23420.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.16e-93AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]