PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G23500.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 375aa    MW: 39832.8 Da    PI: 7.2701
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G23500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP117.85.4e-37166233471
                      STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT---- CS
              SBP   4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhne 71 
                      +egC+adls ak+yhrrhkvCe h+ka+vv++sg++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+
  OBART06G23500.1 166 AEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNH 233
                      589****************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114127.222161238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-33166233IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.4E-31166225IPR004333Transcription factor, SBP-box
PfamPF031104.0E-28167233IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MMSGRMNAAG DESPFPFGAM QAPGPGAYVG FDHGAAAVAA AAAAAQRAGM LQHHHHHMYD  60
GLDFAAAMQF GGGQDPPPHP QLLALPPSMA APPPPPMPMP LQMPMTMPMP GDVYPALGIV  120
KREGGGGGQD AAAGRIGLNL GRRTYFSPGD MLAVDRLLMR SRLGGAEGCK ADLSGAKHYH  180
RRHKVCEYHA KASVVAASGK QQRFCQQCSR FHVLTEFDEA KRSCRKRLAE HNHVVSMSAA  240
KSPISSNTSL PGRAGQACGG GGEADFVRLL DGEVDRINAF FLEQEEEFVI RQRIGAMLHH  300
HHHHQQDHMQ VSSLVHINGG GGGGGSNNIL SCSSVCSSAL PSTATNGEVS DQNNDNSHNN  360
GGNNNNMHLF EVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-26162232979squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057600.0AP005760.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1047G05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642406.11e-142squamosa promoter-binding-like protein 10
SwissprotA2YFT91e-143SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE81e-143SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A0D3GJH70.0A0A0D3GJH7_9ORYZ; Uncharacterized protein
STRINGOBART06G23500.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-39squamosa promoter binding protein-like 8