PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G24100.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 128aa    MW: 14787.1 Da    PI: 8.5161
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G24100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.68.7e-20945137
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevav 37
                     krie+ ++rqvtfskRr+g lKKA+EL vLCda+  v
  OBART06G24100.1  9 KRIEDATRRQVTFSKRRAGFLKKAHELAVLCDAQQMV 45
                     79*******************************9766 PP
2K-box53.69.4e-19401121384
            K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      +a+++  e+++L+kei++L+  +R+  GedL+s  ++ eL qL+ qLe+sl+k+ ++K+el+ +q+e+++++ 
  OBART06G24100.1  40 DAQQMVMEITRLRKEIDQLEAGLRRQTGEDLSSVaTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMV 112
                      4599*****************************84689********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-22160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-20149IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.081146IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-17323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-161045IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-173859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-1841112IPR002487Transcription factor, K-box
PROSITE profilePS5129712.34841128IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGRGKIEMKR IEDATRRQVT FSKRRAGFLK KAHELAVLCD AQQMVMEITR LRKEIDQLEA  60
GLRRQTGEDL SSVATVDELS QLQLQLESSL SKVHARKDEL MSQQLEDMRR MVHYSLIVVA  120
VVVFADEW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1740931e-103AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882170.18e-58MADS-box transcription factor 30 isoform X2
RefseqXP_025882172.16e-58MADS-box transcription factor 30 isoform X4
RefseqXP_025882173.16e-58MADS-box transcription factor 30 isoform X4
RefseqXP_025882176.12e-58MADS-box transcription factor 30 isoform X6
RefseqXP_025882177.12e-59MADS-box transcription factor 30 isoform X7
SwissprotQ655V42e-60MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A0D3GJP86e-86A0A0D3GJP8_9ORYZ; Uncharacterized protein
STRINGOBART06G24100.11e-86(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-19MIKC_MADS family protein