PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G24250.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 305aa    MW: 32377.7 Da    PI: 9.0408
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G24250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-1378122147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  OBART06G24250.1  78 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 122
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.92E-1672128IPR009057Homeodomain-like
PROSITE profilePS5129414.62873127IPR017930Myb domain
TIGRFAMsTIGR015571.1E-1876125IPR006447Myb domain, plants
SMARTSM007172.7E-1077125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-677118IPR009057Homeodomain-like
PfamPF002491.1E-1078122IPR001005SANT/Myb domain
CDDcd001676.90E-880123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSTTPNPIDA SVVSAAAAVA GGGGGGDGGG GGGGKEKEKQ VVAAPLQPPM AVPAPAAAAA  60
MGEEARKVRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAYVGSK TVIQIRSHAQ  120
KYFLKVQKNG TGEHLPPPRP KRKAAHPYPQ KASKNVSPAA ISQPPPLGEQ GCVMSMDTSP  180
VIRNTNPSAV VPSWDNSIAQ PLSASRTQGT GAVATNNCSS SIESPSTTWP TSEAVEQENM  240
LRPLRAMPDF AQVYSFLGSI FDPDTSGHLQ TLKAMDPIDV ETVLLLMRNL SMNLTSPNFA  300
AHGNK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708710.0AK070871.1 Oryza sativa Japonica Group cDNA clone:J023073K02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643725.10.0protein REVEILLE 6 isoform X3
SwissprotQ8H0W31e-92RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0D3GJR30.0A0A0D3GJR3_9ORYZ; Uncharacterized protein
STRINGOBART06G24250.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-79MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]