PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G27560.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 329aa    MW: 35293.6 Da    PI: 6.3406
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G27560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer32.32.2e-1042751650
      ZF-HD_dimer 16 slGghavDGCgEfmpsegeegtaaalkCaACgCHR 50
                     + Gg av GCgEf+++ gee++ ++l+C AC+C R
  OBART06G27560.1 42 AFGGLAVVGCGEFLAA-GEESSFDTLHCVACDCRR 75
                     57*************9.9999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152310.8653181IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.8E-84275IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257740.0014875IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF126203.3E-14196238IPR022256Domain of unknown function DUF3778
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAASGVEVCG DDGGWPELLV VEALVCVDEV GLELEEEEAD LAFGGLAVVG CGEFLAAGEE  60
SSFDTLHCVA CDCRRYSLNR GSPPRTAGVS IACARPWGVA LAMGSAVAGG MRRGSRFLMG  120
FELTCGSQPP SLALWAPGGF CPGFISSPRV QIENSVVEAV VAGSLHRPGS SSFNLVVSAR  180
QEPFCSHSNR PEIMRSSFIR VELGPPVRLW LIGLLLELLI FNDKLRGNLV LGQVKLTPKS  240
TAQQLTSVLC RFRGGNRRGL SVCQAECTPN EAQENSRRGS AAAPCRHAPF SVAWLHQEDC  300
FFSSVIPPFK RMASCFQLVS FGNVLWFIP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3GKV80.0A0A0D3GKV8_9ORYZ; Uncharacterized protein
STRINGOBART06G27560.10.0(Oryza barthii)