PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G27980.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 256aa    MW: 29145.2 Da    PI: 6.2615
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G27980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.87.9e-182083266
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdk 66
                      pGfrFhPt+eel+ +yLk+ v+gkkl++ ++i++v++y+++P++Lp  ++ +e+ewyf + +d 
  OBART06G27980.1 20 LPGFRFHPTEEELLEFYLKQVVQGKKLKF-DIIPTVHLYRHDPRELPGLARIGEREWYFRCAADP 83
                     59**************************9.99***************8778899*****998776 PP
2NAM39.81.4e-128411597128
              NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++l+glkktLv+y+grap+g+ktdWvm+eyrl
  OBART06G27980.1  84 KRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 115
                      5689**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.5621142IPR003441NAC domain
SuperFamilySSF1019414.32E-3917142IPR003441NAC domain
PfamPF023651.2E-1421115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEQQRSRSTA AGGEVEVEQL PGFRFHPTEE ELLEFYLKQV VQGKKLKFDI IPTVHLYRHD  60
PRELPGLARI GEREWYFRCA ADPKRLIGLK KTLVYYEGRA PRGTKTDWVM NEYRLPDAAA  120
IPDTMQLQMQ HDDMVLCKVY RKAVSLKELE QRVAMEELAR STTSSGTHNT GSPLQQDSSS  180
ISISSSSDAM KKEVVGVDEA SAAAHELVRP ATLSLPQLEV ARPQSGLEWM QEPFLTQLRS  240
PWMETWSPYY ASVLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-291414210168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankCU4067030.0CU406703.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C111K18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643570.11e-176NAC domain-containing protein 22-like
SwissprotQ10S654e-74NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0D3GL120.0A0A0D3GL12_9ORYZ; Uncharacterized protein
STRINGOBART06G27980.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-55NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]