PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G02370.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 372aa    MW: 38690.1 Da    PI: 7.0685
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G02370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07307331227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      k +lC+ +++ G C+ G+ C+++Hg+
  OBART07G02370.1 307 KSVLCSKWRK-GRCHNGGACRYSHGE 331
                      678*******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-6303336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788305332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-8305336IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013305331IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5307331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.117343372IPR000571Zinc finger, CCCH-type
SMARTSM0035618344371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MADPNGRRRL PTGDPDQANA SPSRRVSAVD GVTGGEGGPT YSHFPPVTYE PTDVAYGIRD  60
AANDERARAR ARHDQGGGAH DHHHDRPRQD QRGEAHLHDL PGEKSEVPDV GPSDQQGKEA  120
SDTDMAPLAA LAKRSYDVNF PPLHEHRAAP VPAPAPAPAG TMGSSSAQVQ GDGAPDNHDH  180
DPRHLPRQDQ RGGAHPDDLH GEKTIGSGSD ILDDSKRGMI NAGPQHGRIT TSNGGSGSGS  240
DKGKGVSYAG DKPASSSSSS SSAGQQGSDT DKTPSAAAAS SYAVNFPPLL PTPAPAVAGA  300
MGVANHKSVL CSKWRKGRCH NGGACRYSHG EEEQRIVPEM RVGGGGRPCP ELAAAKGWCR  360
YGLNCKYCHG GV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646504.10.0zinc finger CCCH domain-containing protein 47
SwissprotQ8GW050.0C3H47_ORYSJ; Zinc finger CCCH domain-containing protein 47
TrEMBLA0A0D3GM270.0A0A0D3GM27_9ORYZ; Uncharacterized protein
STRINGOBART07G02370.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166371112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]