PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G02420.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 358aa    MW: 37157.2 Da    PI: 6.0774
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G02420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.2e-08241267227
                      -S---SGGGGTS.--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaHgp 27 
                      kt+lC  ++  G  C++G++Ck+aHg+
  OBART07G02420.1 241 KTKLCAEYYSRGlGCPRGNTCKYAHGE 267
                      7999988888888************96 PP
2zf-CCCH26.98.3e-09302328127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC++f  +G C + ++C+FaHg+
  OBART07G02420.1 302 YKTKLCKTFTSGGLCLFAANCRFAHGE 328
                      9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.16E-7238272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479239268IPR000571Zinc finger, CCCH-type
SMARTSM003560.018239267IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6241267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-10241271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12300331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-8301331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202301329IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6301328IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5302328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934331358IPR000571Zinc finger, CCCH-type
SMARTSM003560.19332358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5333357IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4333357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MADSEDGDHA ATTTTEQRYD DDGHLVPSSG GQEEEGSGGH DVVVPGGHVA EDYRSGVGVP  60
VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSGSMGA GTSATRRLPA  120
TEAGHVSPFL GLPYATAFDS PLDRELVGPS SAPPPCSAAS RAWLVRCSSP LSDSEWTRRS  180
ILAREAAHTP ASTVTGRGRF EFVPIPGAPY APPPSFAPIA AGAGPAARPL QQLAFGLEEH  240
KTKLCAEYYS RGLGCPRGNT CKYAHGEDDL RLVVAVSSLA DAGEDSSSSD SSSPALGGGD  300
KYKTKLCKTF TSGGLCLFAA NCRFAHGEVE LGKKEPCWYF FTGQTCPRGD TCGFRHSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882954.11e-150putative zinc finger CCCH domain-containing protein 48
SwissprotQ8GVZ81e-151C3H48_ORYSJ; Putative zinc finger CCCH domain-containing protein 48
TrEMBLA0A0D3GM320.0A0A0D3GM32_9ORYZ; Uncharacterized protein
STRINGOBART07G02420.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173811111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-09C3H family protein