PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G08110.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 515aa    MW: 56007.9 Da    PI: 8.9755
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G08110.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.7e-17200249155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  OBART07G08110.2 200 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 249
                      78*******************......55************************998 PP
2AP242.12.1e-13292342155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  OBART07G08110.2 292 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 342
                      89********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-9200249IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-16200258IPR016177DNA-binding domain
SMARTSM003803.1E-31201263IPR001471AP2/ERF domain
PROSITE profilePS5103217.82201257IPR001471AP2/ERF domain
CDDcd000181.02E-10201256No hitNo description
Gene3DG3DSA:3.30.730.105.9E-17201257IPR001471AP2/ERF domain
PfamPF008475.0E-9292342IPR001471AP2/ERF domain
CDDcd000183.34E-26292352No hitNo description
SuperFamilySSF541718.5E-17292351IPR016177DNA-binding domain
SMARTSM003804.2E-33293356IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-16293350IPR001471AP2/ERF domain
PROSITE profilePS5103216.107293350IPR001471AP2/ERF domain
PRINTSPR003672.4E-6294305IPR001471AP2/ERF domain
PRINTSPR003672.4E-6332352IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MVLPAIPFVS LTSHPSLPPF SLLLHLHCHG SLRRSSLPRG RRRRLPPLGE RDGGAVGATQ  60
LALSPRGWWG CARGERLVSM VLDLNVESPG GSAATSSSST PPPPPDGGGG GYFRFDLLGG  120
SPDEDGCSPP VMTRQLFPSP SAVVALAGDG SSTPPPTMPT PAAAGEGPWP RRPADLGVAQ  180
SQRSPAGGKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY  240
DRAAIKFRGL DADINFNLND YEDDLKQMRN WTKEEFVHIL RRQSTGFARG SSKYRGVTLH  300
KCGRWEARMG QLLGKKYIYL GLFDSEIEAA RAYDRAAIRF NGREAVTNFD PSSYDGDVLP  360
ETDNEVVDGD IIDLNLRISQ PNVHELKSDG TLTGFQLNCD SPEASSSVVT QPISPQWPVL  420
PQGTSMSQHP HLYASPCPGF FVNLREVPME KRPELGPQSF PTSWSWQMQG SPLPLLPTAA  480
SSGFSTGTVA DAARAPSSRP HPFPGHHQFY FPPTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8319750.0CT831975.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647891.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8B8J20.0AP23_ORYSI; APETALA2-like protein 3
TrEMBLA0A0D3GNY30.0A0A0D3GNY3_9ORYZ; Uncharacterized protein
STRINGOBART07G08110.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-92related to AP2.7