PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G08160.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 136aa    MW: 14790.9 Da    PI: 10.6223
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G08160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.91.9e-3773126255
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55 
                      +e  lkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalrnvPvGgg 
  OBART07G08160.1  73 PEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGL 126
                      56789***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3363126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.55977131IPR003851Zinc finger, Dof-type
PfamPF027011.0E-3177125IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MWNQHQAHHG HHQLHQSVEA NQLPMTSASL LLAPRPPDMA AAGILPVSGG GGASSARPAS  60
MAERARMAKI PQPEPGLKCP RCDSTNTKFC YFNNYSLTQP RHFCKACRRY WTRGGALRNV  120
PVGGGLPPQQ ARNQAL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685420.0AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence.
GenBankAP0043030.0AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645540.14e-87dof zinc finger protein DOF5.1 isoform X2
SwissprotQ9M2U17e-42DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A0D3GNY92e-96A0A0D3GNY9_9ORYZ; Uncharacterized protein
STRINGOBART07G08160.14e-97(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.16e-39OBF-binding protein 3