PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G11340.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 239aa    MW: 25496.2 Da    PI: 10.0512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G11340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.3e-1777126355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + GVr+++ +gr++AeIrd + ng  +r+++g+f++ae Aa a+++a+++ +g
  OBART07G11340.1  77 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWIGTFDSAEAAAMAYDQAALSARG 126
                      57******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.0E-2776140IPR001471AP2/ERF domain
PROSITE profilePS5103221.45676134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-2677135IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2077136IPR016177DNA-binding domain
PRINTSPR003677.6E-87788IPR001471AP2/ERF domain
PfamPF008471.7E-1277126IPR001471AP2/ERF domain
PRINTSPR003677.6E-8100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAEHFSHAGM YIGYTADAAA SSSSSSSSSS SSSSEMLRFD TRWPDETPAP SSVAGRRRSA  60
GGDHRQGRGQ TEAAAAFIGV RRRPWGRFAA EIRDSTRNGA RVWIGTFDSA EAAAMAYDQA  120
ALSARGAAAA LNFPVERVRE SLHALSLGAA GGSPVLALKR RHSKRKRRKK AELLAAAAAT  180
AATANATPQT RRISKSTELT TATTDEQKRF VVELEDLGAE YLEELLWLSE INGGSDHAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2467136574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165RRHSKRK
2163168KRKRRK
3163169KRKRRKK
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0626120.0AK062612.1 Oryza sativa Japonica Group cDNA clone:001-105-A10, full insert sequence.
GenBankAP0053250.0AP005325.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0710F09.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646205.11e-167ethylene-responsive transcription factor 15
SwissprotQ8VYM04e-41ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A0D3GQ001e-169A0A0D3GQ00_9ORYZ; Uncharacterized protein
STRINGOBART07G11340.11e-169(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-22ethylene response factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]