PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART07G12220.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 119aa MW: 14203.2 Da PI: 11.2531

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART07G12220.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	46	90	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l OBART07G12220.1 46 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 90 7***************************.*********9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.084	39	94	IPR017930	Myb domain
SMART	SM00717	5.5E-13	43	92	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.85E-21	46	118	IPR009057	Homeodomain-like
Pfam	PF00249	4.3E-15	46	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-20	46	108	IPR009057	Homeodomain-like
CDD	cd00167	3.02E-13	46	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MNIEVVLAPD PEGVIQRSRF EKDQEIGAQP PPPRARCVVR LKLPPAWTPE EDARLQRLAK 60 ENGFRRWSRV ARSMPRRSAR SCRDRWRHHL ARDVYHRPFT ARDDDELLRL HYRLGDSWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3osf_A	2e-12	38	118	1	84	MYB21
3osf_D	2e-12	38	118	1	84	MYB21
3osg_A	2e-12	38	118	1	84	MYB21
3osg_D	2e-12	38	118	1	84	MYB21
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC092749	1e-134	AC092749.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0023M11, from chromosome 10, complete sequence.
GenBank	AC123594	1e-134	AC123594.1 Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0078C13, complete sequence.
GenBank	AP014966	1e-134	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645964.1	2e-58	transcription factor MYB73
TrEMBL	A0A0D3GQ95	2e-80	A0A0D3GQ95_9ORYZ; Uncharacterized protein
STRING	OBART07G12220.1	3e-81	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12569	20	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-13	myb domain protein 73