PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G13300.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 563aa    MW: 60214.5 Da    PI: 4.6382
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G13300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY407.6e-131752132158
                      -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY  21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                       +sYYrC++  gC+++k+v++s++dp+ +eitY g H++
  OBART07G13300.1 175 RKSYYRCAQMlGCTARKQVQQSDDDPSRLEITYIGLHTC 213
                      58******999**************************98 PP
2WRKY76.33.6e-24382438358
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      D y WrKYG K + g++fpr+YYrC +  gC+++k+v++s++dp+ veitY g H++
  OBART07G13300.1 382 DAYPWRKYGHKGILGTRFPRNYYRCGQIlGCTARKQVQQSDDDPSRVEITYIGAHTC 438
                      99************************999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.89E-14163214IPR003657WRKY domain
SMARTSM007741.8E-15168215IPR003657WRKY domain
PROSITE profilePS5081111.623173211IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-12173213IPR003657WRKY domain
PfamPF031064.4E-12175213IPR003657WRKY domain
SuperFamilySSF1182903.14E-22379439IPR003657WRKY domain
SMARTSM007741.9E-29380440IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-23380438IPR003657WRKY domain
PfamPF031068.7E-22382438IPR003657WRKY domain
PROSITE profilePS5081119.933382436IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MASGAGGGTA ATERLIRSAQ KSTNQLKALL AGGGGGGGRS SGAVEVILAD ISDLLSQALA  60
SLMLRAACDD QSLPAAAAPP PPPEASLLPS YGQCVVANSG GRSVSKRKAQ RRSLIAVSAN  120
SVYVSSDLTF QMSREDTEKI FSGKGNGCVF GFGEDGSSRR IILELGDRDD SYPWRKSYYR  180
CAQMLGCTAR KQVQQSDDDP SRLEITYIGL HTCGGDLPSA LQQKLEEHVP AASDDMMMAC  240
TPSWLFIPSP ACSQSELLSE GEVPELRVVR QEPDDPVELV EEHKKPSDAD EDSLALHDSV  300
VPDFMAQKST NQLKVMVANL LPPAMAKGGG AGSSAGVVEV EVILSDIADS LSQALASLQL  360
GGQADGTSRT IMLQYGDRDP GDAYPWRKYG HKGILGTRFP RNYYRCGQIL GCTARKQVQQ  420
SDDDPSRVEI TYIGAHTCGG DRPSSPAATN PADGPRCDAA TSSHRLLPSA LQQKLEEHVP  480
AWSSDDVMMM ACTPSWVFIP SPACSQSELL SEAAVPELRR VRQDAFSPDD PVDVEVEEHK  540
KPCDADDEFL AFHLHDSVVP DFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-153794361574Disease resistance protein RRS1
5w3x_D2e-153794361574Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645533.11e-122uncharacterized protein LOC107278742 isoform X2
TrEMBLA0A0D3GQM50.0A0A0D3GQM5_9ORYZ; Uncharacterized protein
STRINGOBART07G13300.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-19WRKY DNA-binding protein 55