PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G13960.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 189aa    MW: 20639.2 Da    PI: 9.7161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G13960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.00077841151854
                      HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +++  L++++ +      +K + a++L +A++YIk L
  OBART07G13960.1  84 DKITALQQIVSPF-----GKTDTASVLYEAINYIKWL 115
                      7888899999887.....8***************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.77566115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-881124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1081130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.13E-484120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDKPPPPPPS SAPARTSSAD YKKQQGQQEI SSPVKTSSSG GGGKEGKKKR SEEAAGSEGS  60
TKKSKHEATS PTSSLKVPKV KLGDKITALQ QIVSPFGKTD TASVLYEAIN YIKWLHEQVQ  120
LLSDPYMKSS SSKDYNAWGG LDRKEKADAE VDLRSRGLCL VPVSCTPQVY RDNNGPDYWT  180
PPYRSCLYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8361180.0CT836118.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122B23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658548.21e-118PREDICTED: uncharacterized protein LOC102714306
SwissprotQ9FYJ66e-48BH111_ARATH; Transcription factor bHLH111
TrEMBLA0A0D3GQV01e-135A0A0D3GQV0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0AJH81e-133A0A0E0AJH8_9ORYZ; Uncharacterized protein
TrEMBLQ8L4Y91e-134Q8L4Y9_ORYSJ; BHLH transcription factor-like protein
STRINGOGLUM07G12960.11e-133(Oryza glumipatula)
STRINGOBART07G13960.11e-136(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP716979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.11e-46bHLH family protein