PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G19080.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 453aa    MW: 48680.1 Da    PI: 5.7355
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G19080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.21.6e-107694302374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lLl+cAeav+ ++l +a+ lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +   a+++++ +sP++kfsh
  OBART07G19080.1  69 LSLLLRCAEAVAMDQLPEARDLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRISGAFQAYNALSPLVKFSH 162
                      689******************************************************************999********************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      +taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasRp +p slRiTg+g+    s + le+tg+rLa+fA++lg+pfef+++  k  +  
  OBART07G19080.1 163 FTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPTKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFRPIEGKIGHVA 252
                      ******************************************************....9**************************766655555 PP

             GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      +  +L   +  gEa++V++++  h l+d ++s +     +++l+ksl+Pk++++veq++ h s++Fl rf+eal+yysal d   a   +e+ e
  OBART07G19080.1 253 DAAALLGPRhhGEATVVHWMH--HCLYDVTGSDAG----TVRLLKSLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALGDGAGAA-EEEAAE 338
                      66666443358*********9..888888888888....**********************.899******************9777.6899** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++S+W+
  OBART07G19080.1 339 RHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVTLTGSPAAQARLLLGMYPWKGYTLVEEDGCLKLGWKDLSLLTASSWE 430
                      ***********************998887.9*************************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.90442410IPR005202Transcription factor GRAS
PfamPF035145.6E-10569430IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLQGVLSRAP GADAAAMKAK RAADDEEEGG ERERARGKRL AAEGKQGLVV VSTGEEEEAA  60
AETRGLRLLS LLLRCAEAVA MDQLPEARDL LPEIAELASP FGSSPERVAA YFGDALCARV  120
LSSYLGAYSP LALRPLAAAQ SRRISGAFQA YNALSPLVKF SHFTANQAIF QALDGEDRVH  180
VIDLDIMQGL QWPGLFHILA SRPTKPRSLR ITGLGASLDV LEATGRRLAD FAASLGLPFE  240
FRPIEGKIGH VADAAALLGP RHHGEATVVH WMHHCLYDVT GSDAGTVRLL KSLRPKLITI  300
VEQDLGHSGD FLGRFVEALH YYSALGDGAG AAEEEAAERH AVERQLLGAE IRNIVAVGGP  360
KRTGEVRVER WGDELRRAGF RPVTLTGSPA AQARLLLGMY PWKGYTLVEE DGCLKLGWKD  420
LSLLTASSWE PTDGDADADV AVAGDTHHES HDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1547443124379Protein SCARECROW
5b3h_D1e-1547443124379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644982.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-166SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0D3GSJ00.0A0A0D3GSJ0_9ORYZ; Uncharacterized protein
STRINGOBART07G19080.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-158GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]