PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART07G19250.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 313aa MW: 34780.1 Da PI: 8.4647

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART07G19250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.8e-06	285	307	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H OBART07G19250.1 285 VCPKCSKAFRDPVLLVEHVERdH 307 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	6.54E-6	6	37	No hit	No description
Gene3D	G3DSA:4.10.1110.10	1.8E-10	114	172	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	3.73E-9	116	168	No hit	No description
Pfam	PF01428	3.9E-8	124	163	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.45	247	270	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	249	270	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.767	284	312	IPR007087	Zinc finger, C2H2
SMART	SM00355	8	284	307	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	286	307	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHNCCFNKN EIDLRQNLKQ GLRMQWVFCL 60 QHRSYTSHQC PNANQKDVTV LICPLCAKGV RLNPNEDPNI TWDTHVNSDC DPSNYQKVTK 120 KKKCPVPGCR ETLTFSNTIR CKDCTKEHCL KHRFGPDHKC PGPRKPESTF PFGNMLRRSQ 180 KAESRSNSNS SSTSSSWWSS SLLTAATSFK SSAEAGMQKL STATTQAIQK AKDGISTSSS 240 NSGDLVEQCV QCPARFSTVG ALIEHCEKSH QSNSQSSRSR VTVDVCPKCS KAFRDPVLLV 300 EHVERDHGGT SRA

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003981	0.0	AP003981.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1019_E02.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644892.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q0D5B9	0.0	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A0D3GSK8	0.0	A0A0D3GSK8_9ORYZ; Uncharacterized protein
STRING	OBART07G19250.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4763	33	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-109	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]