PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G20430.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 536aa    MW: 57595.1 Da    PI: 5.7535
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G20430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.71.3e-871295352374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lLlecA+ v+++d +++q+l++ l+elasp+gd  q++a+yf+++L arl+ s++++ ++l++ +++  n+s   + ++++    P ++++ 
  OBART07G20430.1 129 SQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKMASYFLQGLFARLTASGPRTLRTLAAASDR--NTSFDSTRRTALRSSAPGPRLGT 220
                      589**********************************************************99888887..46666667788************ PP

             GRAS  96 ltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgvp 175
                           aIle++ +         +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gvp
  OBART07G20430.1 221 SPPIGAILESFLEVaaaassetQRFHILDLSNTFCTQWPTLLEALATRSaDETPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGVP 314
                      *********8754434445567999************************8889**********988889999999******************* PP

             GRAS 176 fefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse............. 251
                      f+f++++++ +l++l+l++L++++     alaVn+v +l  ++  ++  + +rd++   +++l P+vv+vve+ead+   +             
  OBART07G20430.1 315 FRFRAVHHSgDLAELDLDALDLREggaTTALAVNCVNSLRGVV--PGRAR-RRDAFAASLRRLDPRVVTVVEEEADLvA-Sdpdassateeggd 404
                      ******8888**************888889************9..55555.59***********************954.44899********* PP

             GRAS 252 ...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                          Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et+++W +r+++aGF+pv++se++a+++++llr
  OBART07G20430.1 405 teaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLR 497
                      ****************************************.***************************************************** PP

             GRAS 343 kvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                      ++  +g+++ e         + ++l Wk++pLv++SaWr
  OBART07G20430.1 498 RYR-EGWSMREAgtddsaaGAGVFLAWKEQPLVWASAWR 535
                      ***.88888866666666455566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.962102509IPR005202Transcription factor GRAS
PfamPF035144.5E-85129535IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MDTLFRLVSL QAASEQQQQQ QQSASYNSRS TTSSGSRSSS HQTNASYSYY HHSSNSGGGG  60
GGGGGYYYGG QQPPPSQYYY LEPLLLLVAA DLSFPPDLNL DFSSPASSSC GGTASSGAVG  120
GGGGGRWASQ LLLECARSVA ARDSQRVQQL MWMLNELASP YGDVEQKMAS YFLQGLFARL  180
TASGPRTLRT LAAASDRNTS FDSTRRTALR SSAPGPRLGT SPPIGAILES FLEVAAAASS  240
ETQRFHILDL SNTFCTQWPT LLEALATRSA DETPHLSITT VVSAAPSAPT AAVQRVMREI  300
GQRMEKFARL MGVPFRFRAV HHSGDLAELD LDALDLREGG ATTALAVNCV NSLRGVVPGR  360
ARRRDAFAAS LRRLDPRVVT VVEEEADLVA SDPDASSATE EGGDTEAAFL KVFGEGLRFF  420
SAYMDSLEES FPKTSNERLA LERGAGRAIV DLVSCPASES MERRETAASW ARRMRSAGFS  480
PVAFSEDVAD DVRSLLRRYR EGWSMREAGT DDSAAGAGVF LAWKEQPLVW ASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-14612353682474Protein SHORT-ROOT
5b3h_B1e-14612353628420Protein SHORT-ROOT
5b3h_E1e-14612353628420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039850.0AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0054370.0AP005437.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1113_E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645491.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A0D3GSY20.0A0A0D3GSY2_9ORYZ; Uncharacterized protein
STRINGOBART07G20430.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-132GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]