PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G20570.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 219aa    MW: 22230.1 Da    PI: 8.5917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G20570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014135157123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C ++F++   L  H r+H
  OBART07G20570.1 135 HRCSICLRTFPSGQALGGHKRLH 157
                      79*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.30784111IPR007087Zinc finger, C2H2
SMARTSM003550.6384106IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-1284108IPR007087Zinc finger, C2H2
SuperFamilySSF576672.54E-784157No hitNo description
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PfamPF139121.2E-12134159IPR007087Zinc finger, C2H2
SMARTSM003550.27135157IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162135157IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MALDGKPPVP PPSTPPMDSW ACGGRRSKRR GGGGGISGSS GSSGGGESEE EYLAACLLML  60
ARGVRDEAEV VGVAAAAKPS QHGYGCSVCG KVYGSYQALG GHKTSHRKPP SPAAEPAAGE  120
EPSSGGMITS EAKVHRCSIC LRTFPSGQAL GGHKRLHYEG GAVGDAVKEK NSLKTKAAAV  180
ATAVLKDFDL NLPAAATTPG DEAESSPPEA KRARLLLLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647209.19e-98zinc finger protein 1
TrEMBLA0A0D3GSZ71e-154A0A0D3GSZ7_9ORYZ; Uncharacterized protein
STRINGOBART07G20570.11e-155(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.16e-25C2H2 family protein