PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G20660.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 195aa    MW: 19741.1 Da    PI: 8.1561
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G20660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00064163123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F +   L  H  +H
  OBART07G20660.1 41 FRCSLCGKAFASYQALGGHKASH 63
                     89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-124065IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8664168IPR007087Zinc finger, C2H2
SuperFamilySSF576673.0E-84163No hitNo description
SMARTSM003550.0264163IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SuperFamilySSF576673.0E-8103130No hitNo description
PfamPF139122.2E-7107130IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014108135IPR007087Zinc finger, C2H2
SMARTSM003554.6108130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEQGGGAADG GDLISLCLMA LAAAARGEST ALAPPPPELH FRCSLCGKAF ASYQALGGHK  60
ASHRKPSAAA AAPPAHRDVV VAAAPASSGG VAADAAAASE ADGRRRRHVC SLCRRGFATG  120
QALGGHKRFH YLHGPSVSAT VSSAETAASV GAAFDLNVAP IKEIAGEQRR CGEEADDDDE  180
AESPSPAKKP RRRPG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1113010.0AK111301.1 Oryza sativa Japonica Group cDNA clone:002-181-B04, full insert sequence.
GenBankAP0037500.0AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646226.12e-70zinc finger protein 36-like
TrEMBLA0A0D3GT071e-133A0A0D3GT07_9ORYZ; Uncharacterized protein
STRINGOBART07G20660.11e-134(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-07salt tolerance zinc finger