PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G20940.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 385aa    MW: 41245.9 Da    PI: 6.6649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G20940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30170226259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+p+sYY+Ct+ +C v+k+ve+sa d+++v+i+Y+g+H+he
  OBART07G20940.1 170 DDGYNWRKYGQKAVKGGEYPKSYYKCTHLNCLVRKNVEHSA-DGRIVQIIYRGQHTHE 226
                      8****************************************.***************8 PP
2WRKY70.13.1e-223033491359
                      E--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  13 KevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      K+vkg+++prsYY+Ct+ gC vkk+vers e+p++v++tYeg+H h+
  OBART07G20940.1 303 KVVKGNPYPRSYYKCTYLGCDVKKQVERSVEEPNAVITTYEGKHIHD 349
                      99*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-27164228IPR003657WRKY domain
SuperFamilySSF1182901.28E-24167228IPR003657WRKY domain
SMARTSM007742.5E-32169227IPR003657WRKY domain
PROSITE profilePS5081123.376170228IPR003657WRKY domain
PfamPF031061.0E-22170226IPR003657WRKY domain
SMARTSM007741.8E-21299350IPR003657WRKY domain
PROSITE profilePS5081124.34302351IPR003657WRKY domain
SuperFamilySSF1182904.32E-18302351IPR003657WRKY domain
PfamPF031069.4E-16302348IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-20302351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAAARRVAGG GGGSLWGPPQ PPPSTGGGIP QLPAAAAAPV EGLLDAPFSS SSGGGGGGWP  60
PPPPPLSGTA VLIGYPQGNF ETFPQQDLVP LTAQEVHSKC ITFGRAENLS FIPLATSALV  120
SQHTGSSSVN VTPLQEILTS PSQISNVNTE SIGVLQGLPA SSIVLDRPTD DGYNWRKYGQ  180
KAVKGGEYPK SYYKCTHLNC LVRKNVEHSA DGRIVQIIYR GQHTHERPSK RRFKDCGGIS  240
DDLDDFSGTT GTSVRSQPDY DDYCRKPIIP SGTMVAPLVK KIEDGDDQLS GSSDNQDEHD  300
DEKVVKGNPY PRSYYKCTYL GCDVKKQVER SVEEPNAVIT TYEGKHIHDV PAARNKSHVV  360
ANASLLQNTK SNTYCTEQSY TTITC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-191703521878Probable WRKY transcription factor 4
2lex_A6e-191703521878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418470.0AY341847.1 Oryza sativa (japonica cultivar-group) WRKY6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646950.20.0probable WRKY transcription factor 3
TrEMBLA0A0D3GT390.0A0A0D3GT39_9ORYZ; Uncharacterized protein
STRINGOBART07G20940.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.17e-49WRKY DNA-binding protein 58