PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G22170.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 87aa    MW: 9091.35 Da    PI: 6.4936
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G22170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.79e-155285132
             GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32
                     C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk
  OBART07G22170.1 52 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRK 85
                     6668877778***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00654887IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-104886No hitNo description
Gene3DG3DSA:3.30.50.102.1E-115185IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.2E-135285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MMHMLVAPDG GGGGEMPPPY GGAAAPAPPP MEQELELHRD NADDGLDGHV RCLRCGISGN  60
ATPHMRRGPD GPRTLCNACG IAYRKVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663171e-134AK066317.1 Oryza sativa Japonica Group cDNA clone:J013064I12, full insert sequence.
GenBankAK0738031e-134AK073803.1 Oryza sativa Japonica Group cDNA clone:J033068D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657954.15e-46PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI1QC624e-56I1QC62_ORYGL; Uncharacterized protein
STRINGORGLA07G0170400.16e-57(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.36e-13GATA-type zinc finger protein with TIFY domain