PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G23470.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 382aa    MW: 41312.4 Da    PI: 5.1698
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G23470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.11.7e-3585184297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife+
  OBART07G23470.1  85 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFEI 178
                      79************************99877778***************************************999****************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  OBART07G23470.1 179 ARNIWR 184
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.7E-3186183IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLPAGGYPSA AAISFPDADV DDDSDDGDFT DAPLIDPSDP TFPNPASSSA AAAAMTTPAA  60
AGGGSGSGSV GGVGSSSGGG ERRPLFQRLW TEEDEIVILR GFAEFTAARG TAFASHQYDT  120
DPFYEDMRRR LQLDFSKSQL VEKLRRLKRK YRNCVDRLRA TGQSFSFRSP HEQAIFEIAR  180
NIWRPTNKHG RDGDSDDEDA TQVTPAPVPV NTSPNGEVKS PTSGRQRRRR RGGDFAATAP  240
AAAPATTNMV QPIQPVQVPV SVPVKMDDTL PALSQTTMPI TVTMEGSEPL RLPVMPPQPA  300
VLDADKSCLT PLFKEMVRAV INIGSNPFGA QLSEPPHGLP MEGEKWRKQR ILELEVYLKR  360
IELLQDQVKA TLEELKSSAP GT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645065.10.0probable transcription factor At5g28040
TrEMBLA0A0D3GTZ80.0A0A0D3GTZ8_9ORYZ; Uncharacterized protein
STRINGOBART07G23470.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-43DNA-binding storekeeper protein-related transcriptional regulator