PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART07G24080.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 567aa MW: 59975.6 Da PI: 5.3939

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART07G24080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.4	4.2e-15	113	173	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++ OBART07G24080.1 113 EAKRRARLVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENAALKQQL 173 78********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-14	111	175	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.484	113	176	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-13	113	173	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.44E-13	115	173	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.8E-17	115	174	No hit	No description
CDD	cd14704	6.77E-22	116	167	No hit	No description
PROSITE pattern	PS00036	0	119	133	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MAEPDLLAPF ADLPFPPGDD FPDFPALGDD AFALEDFDLE DLDFDFDVDL FPPDAPPPVT 60 TSSSSAAGSP EAGTSSTGDG GSKNEESADS SSPSRSGSDG GGGGSGKDGK DDEAKRRARL 120 VRNRESAHQS RQRKKQYVEE LEGKVKVMQA TIADLTARIS CVTAENAALK QQLSGTAGAG 180 AAALPPPMPM YPAVYPLPMP WIHPAYAMRG SQVPLVPIPR LKTQLPASTP EPPAKKARKT 240 KKVAGVSLLG LLFLMMVCGC LVPAVNRMYG AAYTGEGAAI VPSHHGRILA VEGPQNSVSN 300 GVDPKVPQNG SETLPALLYL PRNGKHVKIN GNLVIKSIVA SEKASSRLSN YGGKGSGNQE 360 KEETSLAIPG YVAPLEAGEV LDSAFNELMA LAPGDGSIYR EDDGMLPQWF SEAMSGPMLN 420 SGMCTEVFQF DLSPTTADAN GIVPVYSGSV TNTSQNYTEN LPSGPVQKVK NRRISYSEAI 480 PLRGLISNDT DHFKAPPKNH SQSHAGRKPV SSVVVSVLAD PREASDRDGE GRISSNSVSR 540 IFVVVLIDSV KPVFIDRKQN LQKIVAS

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MAEPDLLAPF ADLPFPPGDD FPDFPALGDD AFALEDFDLE DLDFDFDVDL FPPDAPPPVT  60
TSSSSAAGSP EAGTSSTGDG GSKNEESADS SSPSRSGSDG GGGGSGKDGK DDEAKRRARL  120
VRNRESAHQS RQRKKQYVEE LEGKVKVMQA TIADLTARIS CVTAENAALK QQLSGTAGAG  180
AAALPPPMPM YPAVYPLPMP WIHPAYAMRG SQVPLVPIPR LKTQLPASTP EPPAKKARKT  240
KKVAGVSLLG LLFLMMVCGC LVPAVNRMYG AAYTGEGAAI VPSHHGRILA VEGPQNSVSN  300
GVDPKVPQNG SETLPALLYL PRNGKHVKIN GNLVIKSIVA SEKASSRLSN YGGKGSGNQE  360
KEETSLAIPG YVAPLEAGEV LDSAFNELMA LAPGDGSIYR EDDGMLPQWF SEAMSGPMLN  420
SGMCTEVFQF DLSPTTADAN GIVPVYSGSV TNTSQNYTEN LPSGPVQKVK NRRISYSEAI  480
PLRGLISNDT DHFKAPPKNH SQSHAGRKPV SSVVVSVLAD PREASDRDGE GRISSNSVSR  540
IFVVVLIDSV KPVFIDRKQN LQKIVAS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121898	0.0	AK121898.1 Oryza sativa Japonica Group cDNA clone:J033105F09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647746.1	0.0	bZIP transcription factor 60
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	A0A0D3GU67	0.0	A0A0D3GU67_9ORYZ; Uncharacterized protein
STRING	OBART07G24080.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	2e-66	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]