PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G25600.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 380aa    MW: 40343.8 Da    PI: 4.7577
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G25600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.6e-052161337
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +r+C+ ++  ++  +C+ ++  lC  C  + H        H
  OBART07G25600.1 21 ARCCDFCGGLPAVVYCRADSARLCLPCDRHVHAAntvstrH 61
                     689***************************99654455445 PP
2CCT62.91e-21339379343
              CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                        ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+k+
  OBART07G25600.1 339 TVISRYKEKRKNRRFDKQIRYESRKARADGRLRIKGRFAKS 379
                      5689***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.0E-111966IPR000315B-box-type zinc finger
PROSITE profilePS501199.7411966IPR000315B-box-type zinc finger
CDDcd000211.08E-72466No hitNo description
PROSITE profilePS5101714.932337379IPR010402CCT domain
PfamPF062031.7E-16339379IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MARDDDPAKK LAVDGGVAAA ARCCDFCGGL PAVVYCRADS ARLCLPCDRH VHAANTVSTR  60
HARAPLCSAC RSAPAAAFRR GDGFLCSSCD FDERLRRGSI GSGGDELPLD DRAAVEGYTG  120
CPSIGELAAI LGVVSGDSDK PADDGWWSAS WEEEASQVLS LDDIIVPTTS CHGLRPLLTP  180
PSPENQSSPD NGELDGEVLR QLGELARSEA AAQATFVAGD QLASWASPEF TSGHGDFGIE  240
AASTTVPSCE NETWIMSTDC TDPTNASKTD IACEEAPASS SAEPCLSSLV EISEICPSMS  300
YSGSGIDNGG HDPSTLAIMP TQALPKKGVY DIAYPDRGTV ISRYKEKRKN RRFDKQIRYE  360
SRKARADGRL RIKGRFAKSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201010.0AK120101.1 Oryza sativa Japonica Group cDNA clone:J013022K23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645435.10.0zinc finger protein CONSTANS-LIKE 13 isoform X1
TrEMBLA0A0D3GUQ00.0A0A0D3GUQ0_9ORYZ; Uncharacterized protein
STRINGOBART07G25600.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.15e-49B-box type zinc finger protein with CCT domain