PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART07G25780.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 212aa MW: 22917.4 Da PI: 10.3417

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART07G25780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.3	3.9e-18	58	106	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g OBART07G25780.1 58 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 106 56****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.547	57	114	IPR001471	AP2/ERF domain
CDD	cd00018	1.42E-24	57	113	No hit	No description
SMART	SM00380	1.4E-29	57	120	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.6E-28	58	114	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.35E-20	58	115	IPR016177	DNA-binding domain
PRINTS	PR00367	5.9E-8	58	69	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-11	60	106	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.9E-8	80	96	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010102	Biological Process	lateral root morphogenesis
GO:0010432	Biological Process	bract development
GO:0010451	Biological Process	floral meristem growth
GO:0010582	Biological Process	floral meristem determinacy
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MNTRGSGSSS SSSSSQASLM AFSEPPKPAS QPSPPSSPMS ERPPSGRSRR RAQEPGRFLG 60 VRRRPWGRYA AEIRDPTTKE RHWLGTFDTA QEAALAYDRA ALSMKGAQAR TNFVYTHAAY 120 NYPPVPRAVP RAAVRRRRRA DMRRYSDADA YGMMGLREDV DDLAQMVAGF WGGGDAADQL 180 GACGFPASGG AADMVASSQG SDSYSPFSFL SH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-19	54	113	11	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269\|PubMed:12835399, ECO:0000269\|PubMed:14503923, ECO:0000269\|PubMed:26744119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00520	DAP	Transfer from AT5G18560	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB103120	0.0	AB103120.1 Oryza sativa Japonica Group fzp gene for frizzy panicle, complete cds.
GenBank	AK105365	0.0	AK105365.1 Oryza sativa Japonica Group cDNA clone:001-119-F02, full insert sequence.
GenBank	AP004570	0.0	AP004570.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0625E02.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105200.2	8e-50	branched silkless 1
Swissprot	Q8H3Q1	2e-50	FZP_ORYSJ; Ethylene-responsive transcription factor FZP
TrEMBL	A0A0D3GUS5	1e-149	A0A0D3GUS5_9ORYZ; Uncharacterized protein
STRING	OBART07G25780.1	1e-150	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10525	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18560.1	4e-39	ERF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhu QH,Hoque MS,Dennis ES,Upadhyaya NM Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L). BMC Plant Biol., 2003. 3: p. 6 [PMID:14503923] Liu HQ, et al. [Towards the positional cloning of a spikelet identity gene frizzle panicle (FZP) in rice (Oryza sativa L.)]. Yi Chuan Xue Bao, 2003. 30(9): p. 811-6 [PMID:14577371] Jang S, et al. The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice. Plant Mol. Biol., 2003. 53(3): p. 357-69 [PMID:14750524] Rossini L, et al. Candidate genes for barley mutants involved in plant architecture: an in silico approach. Theor. Appl. Genet., 2006. 112(6): p. 1073-85 [PMID:16501940] Yi G, et al. Morphological and molecular characterization of a new frizzy panicle mutant, "fzp-9(t)", in rice (Oryza sativa L.). Hereditas, 2005. 142(2005): p. 92-7 [PMID:16970618] Duan Y, et al. Genetic analysis and mapping of gene fzp(t) controlling spikelet differentiation in rice. Sci. China, C, Life Sci., 2003. 46(3): p. 328-34 [PMID:18763148] Routledge AP, et al. Magnaporthe grisea interactions with the model grass Brachypodium distachyon closely resemble those with rice (Oryza sativa). Mol. Plant Pathol., 2004. 5(4): p. 253-65 [PMID:20565594] Lee DY,An G Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] Derbyshire P,Byrne ME MORE SPIKELETS1 is required for spikelet fate in the inflorescence of Brachypodium. Plant Physiol., 2013. 161(3): p. 1291-302 [PMID:23355632] Poursarebani N, et al. The Genetic Basis of Composite Spike Form in Barley and 'Miracle-Wheat'. Genetics, 2015. 201(1): p. 155-65 [PMID:26156223] Bai X, et al. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119] Ma X, et al. Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing. Sci Rep, 2016. 6: p. 27425 [PMID:27251022]