PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G27500.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 359aa    MW: 39449.1 Da    PI: 6.9651
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G27500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-11304353147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r++W++  ++ l+++v+++G+g+Wk I    +   + R+  ++k++++++
  OBART07G27500.1 304 RKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYPdvfEDRSTVDLKDKFRNL 353
                      789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.141299358IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-11300353IPR009057Homeodomain-like
SuperFamilySSF466891.42E-13302354IPR009057Homeodomain-like
SMARTSM007171.2E-7303356IPR001005SANT/Myb domain
PfamPF002491.2E-9304353IPR001005SANT/Myb domain
CDDcd116605.38E-21305355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDAPTLLRKA RAVLADPDLA PFFPQHLAAP ASADDAPAAA VAHLNRLLDV EWASLPPSSL  60
EIAAERIVGS QALHSWANAD HAQRSKLRLL AEKYSTSLYQ FYSPLAVSAV GESTALEILD  120
TLQRPDASTN HPGTLPQVDN APETNGASHC AQQNDGAKSG LVKQNAEADR PQQDSTRHQQ  180
DSVQGASNSQ LKESSVTMES IRGTGPDITG FMEEATPRVA GQFAPDNIKN HQVTGSKRSL  240
MERNPTASTY EGEHLCNIMV VSHRIFEVQW DGSDSEGKRP AAKRRLPIFE RTAKPSPTAA  300
HKTRKKWSEK QEKTLLEGVE KYGKGNWKDI KMAYPDVFED RSTVDLKDKF RNLERHLCA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051990.0AP005199.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0627E10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646481.10.0uncharacterized protein LOC4344404
TrEMBLA0A0D3GVD50.0A0A0D3GVD5_9ORYZ; Uncharacterized protein
STRINGOBART07G27500.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-11TRF-like 5