PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G02270.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 426aa    MW: 45404.5 Da    PI: 6.1596
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G02270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.8e-21118173156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  OBART08G02270.1 118 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 173
                      688999***********************************************999 PP
2START24.94.3e-092343033089
                      TTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT..E CS
            START  30 gdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg..g 89 
                      ++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW+  +     +a+tle  +s+  +
  OBART08G02270.1 234 EEEYARTFPRGLGpkspeLRSEASRETAVVIMNHVSLVEMLMDVG-QWTALFSsivsRAATLENANSNqsN 303
                      6889999988777999999**************************.9999999888899999999988551 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-23104159IPR009057Homeodomain-like
SuperFamilySSF466891.04E-20105175IPR009057Homeodomain-like
PROSITE profilePS5007117.394115175IPR001356Homeobox domain
SMARTSM003891.1E-20116179IPR001356Homeobox domain
CDDcd000861.35E-20117176No hitNo description
PfamPF000461.1E-18118173IPR001356Homeobox domain
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.607.7E-4160203IPR009057Homeodomain-like
SuperFamilySSF559615.13E-12249399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSPAMIGRPN GGGGGGGVAY ASSSSALSLG QSLLDGHHHQ LPSLLQQHHN GHHLLDQHQQ  60
HQHQLPPQAT TTSESDGRAP RDELEMSKSG GSDNLESGGG GGGGGSGDDQ DPNQRPRKKR  120
YHRHTQHQIQ ELEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKTQHERHE  180
NNALRAENEK LRAENMRYKE ALANASCPNC GGPAAIGEIT SASPPALGGE ALGEEEYART  240
FPRGLGPKSP ELRSEASRET AVVIMNHVSL VEMLMDVGQW TALFSSIVSR AATLENANSN  300
QSNMLILQEC CTDATGSYVI YAPVDVVAMN VVLNGGDPDY VALLPSGFAI LPDGPDGGGG  360
SLLTVAFQIL VDSVPTAKLS LGSVATVNSL IACTVERIKA AITGDNGVAP PCPRGSREGS  420
RANSEV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185630.0AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695486.11e-115PREDICTED: homeobox-leucine zipper protein ROC7
SwissprotA2YR021e-110ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLA0A0D3GW520.0A0A0D3GW52_9ORYZ; Uncharacterized protein
STRINGOBART08G02270.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2515933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.22e-62HD-ZIP family protein