PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G03010.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 336aa    MW: 35843.7 Da    PI: 10.289
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G03010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-14105149347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
  OBART08G03010.1 105 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 149
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.43198154IPR017930Myb domain
SuperFamilySSF466891.0E-1799154IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-18101153IPR006447Myb domain, plants
SMARTSM007173.5E-11102152IPR001005SANT/Myb domain
CDDcd001677.43E-10105150No hitNo description
PfamPF002494.8E-12105149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-12105148IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MPQDSRPAAM RLFGVTISPP PPPEPEPEPE PDPSDPRDPS PRPAREEAMR KCKSMGNLAA  60
ASSAAAGGGG AGDAGGSGDG YLSDGGLLLS SGKRRRAQER KKAVPWTEEE HRTFLAGLEK  120
LGKGDWRGIS KNFVTTRTPT QVASHAQKYF LRQTNPNKKK RRSSLFDMMA TDMSPAPNCP  180
VLPPSMGKLH DMVAMTKQLQ NSSLEGVSSS STVNLAPQVA RDLPPPIPSF KATNVDSSLS  240
KMNHMDGFLR APMLFRPIPR IAEGASSSTP ATASIADLEF QANLTACSNA LFATRRKPKK  300
ADPPAEKDLD LTVAPPSQQN RASISSQNAV GVIQVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157161KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420170.0AK242017.1 Oryza sativa Japonica Group cDNA, clone: J075110L24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648291.10.0transcription factor MYBS3-like isoform X1
TrEMBLA0A0D3GWD40.0A0A0D3GWD4_9ORYZ; Uncharacterized protein
STRINGOBART08G03010.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-37MYB_related family protein