PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G03550.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 105aa    MW: 11100.6 Da    PI: 10.422
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G03550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.6e-084386243
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43
                     g+W++ +d  l++a k+++++   +W+++a  ++ g+t   c  r
  OBART08G03550.1 43 GSWSAGDDRALLNALKEFPKDtamRWEKVAVAVP-GKTKAACMKR 86
                     79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-104191IPR009057Homeodomain-like
SMARTSM007172.3E-64193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-64293IPR009057Homeodomain-like
PROSITE profilePS500906.7714391IPR017877Myb-like domain
PfamPF002497.0E-74386IPR001005SANT/Myb domain
CDDcd001676.07E-74591No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MASGFFPDRP MFLRKRKPLD PRSEATDAGG GNAGGGGGES GDGSWSAGDD RALLNALKEF  60
PKDTAMRWEK VAVAVPGKTK AACMKRVTEL KRDFRSSKAA SEAAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11217LRKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736171e-154AK073617.1 Oryza sativa Japonica Group cDNA clone:J033051J11, full insert sequence.
GenBankAK1039731e-154AK103973.1 Oryza sativa Japonica Group cDNA clone:001-016-D01, full insert sequence.
GenBankAP0046981e-154AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149641e-154AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650326.17e-58transcription factor MAMYB
SwissprotQ9ASQ22e-28MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A0D3GWJ65e-68A0A0D3GWJ6_9ORYZ; Uncharacterized protein
STRINGOBART08G03550.19e-69(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.16e-22MYB_related family protein