PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G03600.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 216aa    MW: 22437.8 Da    PI: 7.5007
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G03600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-0999120526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ +  tG+C++G++C+FaHg
  OBART08G03600.1  99 ICNKWEMTGYCPFGSKCHFAHG 120
                      7********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.6E-1190125IPR000571Zinc finger, CCCH-type
SMARTSM003560.003194121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-796125IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-699120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.24499122IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGG GGSSRAGSEQ  60
PPPGKKSRGG GGGGEGGGNT SKSRAIGKMF FKTKLCCKIC NKWEMTGYCP FGSKCHFAHG  120
AAELHKYGGG LVDIDSRDAA ATPDSKQAVV SAKAPAETAA ASTTVLPHAD VYHLGVQAQR  180
STIAGQRSGQ VQRPIQKWKG PDKISRIYGD WIDETE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046351e-158AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01.
GenBankAP0046981e-158AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149641e-158AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-158CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648128.16e-72zinc finger CCCH domain-containing protein 56
RefseqXP_015648129.16e-72zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ35e-73C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0D3GWK31e-156A0A0D3GWK3_9ORYZ; Uncharacterized protein
STRINGOBART08G03600.11e-157(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.14e-36C3H family protein