PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G03630.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 189aa MW: 20426.5 Da PI: 6.1629

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G03630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.5e-31	1	52	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OBART08G03630.1 1 MRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 52 79*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-27	1	53	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	1	52	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.29E-14	1	53	IPR009057	Homeodomain-like
Pfam	PF00249	8.2E-7	1	51	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MRWTSTLHAR FVHAVELLGG HDRATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTERPA 60 ASSDQADGFE NGSAGEICDE NSLDLHGGCR PEAMSAAATA AAARHGRLAA CNDHGSSTGA 120 HGALWNSSSR EDWSGFHESN TGTMQTLKDM QSKSLEILSD MNSCVSETTS STSELNLEFT 180 LGRPQNRPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269\|PubMed:18594992}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095689	1e-109	FP095689.1 Phyllostachys edulis cDNA clone: bphylf026d19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648943.1	1e-130	probable transcription factor RL9 isoform X1
Swissprot	Q0J235	2e-38	ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBL	A0A0D3GWK6	1e-137	A0A0D3GWK6_9ORYZ; Uncharacterized protein
TrEMBL	I1QFV6	1e-135	I1QFV6_ORYGL; Uncharacterized protein
STRING	ORGLA08G0030700.1	1e-136	(Oryza glaberrima)
STRING	OBART08G03630.1	1e-138	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-40	G2-like family protein