PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G03930.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 129aa    MW: 13873.9 Da    PI: 9.8896
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G03930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.86.4e-3214115196
           DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqqle 88 
                      aCaaC++++  +C+++C lapyfpa++pk+f++++ +FG++++l + +a ++  r      + m+++vy A+ar++dP+ Ga+g i+klqqql+
  OBART08G03930.1  14 ACAACAHQGAsSCPPNCGLAPYFPADKPKRFWYARLMFGMERILGFSEAEKQGIRpngstVISMAAVVYLADARVEDPILGAYGRIRKLQQQLD 107
                      7********999************************************976555666666899******************************* PP

           DUF260  89 qlkaelal 96 
                      +lkae a+
  OBART08G03930.1 108 RLKAERAR 115
                      ****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.38513120IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-2414114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MASPSPPTTT TQQACAACAH QGASSCPPNC GLAPYFPADK PKRFWYARLM FGMERILGFS  60
EAEKQGIRPN GSTVISMAAV VYLADARVED PILGAYGRIR KLQQQLDRLK AERARHSPAP  120
SGNGKPSPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070121e-152AK107012.1 Oryza sativa Japonica Group cDNA clone:002-120-F04, full insert sequence.
GenBankAP0056051e-152AP005605.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_C01.
GenBankAP0058471e-152AP005847.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ9990_A01.
GenBankAP0149641e-152AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649522.16e-46LOB domain-containing protein 1
TrEMBLA0A0D3GWN71e-90A0A0D3GWN7_9ORYZ; Uncharacterized protein
STRINGOBART08G03930.12e-91(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16910911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-13LOB domain-containing protein 4