PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G04650.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 262aa    MW: 29536.5 Da    PI: 9.3661
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G04650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.51.1e-115187238
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38
                     +++k +rr+++NReAAr+sR+RKka+i++Le+   +L
  OBART08G04650.1 51 PRDKIQRRLAQNREAARKSRLRKKAYIQNLETSRMKL 87
                     57999**************************854444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-848100No hitNo description
SMARTSM003381.0E-450107IPR004827Basic-leucine zipper domain
PfamPF001708.9E-95287IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.5315294IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.87E-754100No hitNo description
PROSITE patternPS0003605772IPR004827Basic-leucine zipper domain
PfamPF141441.4E-21139203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVVAPPPLTE PKFESQLALP LQHGDDQDDA AALQESPRHA SDSFEQEASK PRDKIQRRLA  60
QNREAARKSR LRKKAYIQNL ETSRMKLAHL EQEITRARQQ SAYINRSSNP ATLPAPIDSG  120
VVTFEVEYAQ WVEEQGRQTA ELRAALQAAA EGPELRAVVE AALAHYDRLF AAKREAARRD  180
VFFVMSGVWR TGAERFFLWI AGLSNLVAFV DHADHLRQET LQNMYKILTL PQAARGLLAL  240
GDYCQRLRAL SSLWAARPRE PA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315140.0CT831514.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129B22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883355.11e-134transcription factor TGAL10-like isoform X3
RefseqXP_025883356.11e-134transcription factor TGAL10-like isoform X3
SwissprotQ6ZBS81e-135TGL10_ORYSJ; Transcription factor TGAL10
TrEMBLA0A0D3GWW90.0A0A0D3GWW9_9ORYZ; Uncharacterized protein
STRINGOBART08G04650.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2953444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.24e-58TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]