PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G07280.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 177aa MW: 19352.8 Da PI: 5.9177

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G07280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.7	1.5e-06	40	74	2	35
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAk 35 r+R+t+++eq+ +Le+ F++ +p ++e +++ + OBART08G07280.1 40 RSRWTPKPEQILILESIFNSgMVNPAKDETARIRR 74 89***************99****99999876 PP
2	Wus_type_Homeobox	63.9	3.2e-21	39	86	2	49
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkN 49 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+N OBART08G07280.1 39 VRSRWTPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDAN 86 589********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MDRTATASWE VMSRRGEQQQ QLMMQAPARH AAAAAGEPVR SRWTPKPEQI LILESIFNSG 60 MVNPAKDETA RIRRLLERFG AVRDANMGLM ARHGGGDHHY SSYADSDATQ LSYQPTGTIQ 120 VFINGVAYDV PSGGALDMAG TFGRDAMLVH SSGEVLPVDE HGVLINSLQM GECYYLL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107305	1e-147	AK107305.1 Oryza sativa Japonica Group cDNA clone:002-126-D01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695539.1	2e-77	PREDICTED: WUSCHEL-related homeobox 10-like
Swissprot	Q6Z3L4	3e-60	WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBL	A0A0D3GXV1	1e-129	A0A0D3GXV1_9ORYZ; Uncharacterized protein
STRING	OBART08G07280.1	1e-130	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	2e-25	WUSCHEL related homeobox 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]