PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G07590.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 222aa    MW: 22523.1 Da    PI: 8.1112
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G07590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.26e-071658542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C  +++  ++ +C  +   lC  C  + H        H++vpl
  OBART08G07590.1 16 ACGVCGSA-ATVYCAADAAALCVPCDAAVHAAnplasrHDRVPL 58
                     6******9.*********************66899999999986 PP
2CCT67.34.2e-23123166144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Re++++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  OBART08G07590.1 123 REERVRRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 166
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.8E-111258IPR000315B-box-type zinc finger
PROSITE patternPS0019701220IPR0060582Fe-2S ferredoxin, iron-sulphur binding site
CDDcd000218.16E-81758No hitNo description
PROSITE profilePS501199.571758IPR000315B-box-type zinc finger
PROSITE profilePS5101716.479123165IPR010402CCT domain
PfamPF062031.3E-17123165IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MASDGSASPA SCGGAACGVC GSAATVYCAA DAAALCVPCD AAVHAANPLA SRHDRVPLAV  60
AMAAASSGVY DHLFAPDDDA ASSWAAAAAA GAALAALTPW SPADSVVVPT SAAGAVAAAA  120
AAREERVRRY REKRKNRKFQ KTIRYASRKA YAEARPRIKG RFVKRATTAA ASSSSDDDST  180
AAATEEAKFW LSFSDDGRAD GVGFYMDSTT AATAAYGVVP TF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8336871e-152CT833687.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182019.17e-60zinc finger protein CONSTANS-LIKE 2-like
TrEMBLA0A0D3GXZ11e-151A0A0D3GXZ1_9ORYZ; Uncharacterized protein
STRINGOBART08G07590.11e-152(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-10CONSTANS-like 5