PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G09500.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 276aa    MW: 29951.2 Da    PI: 6.1785
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G09500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.35.5e-082182512154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  OBART08G09500.1 218 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 251
                      569*****************************87 PP
2ELK27.19.9e-10172193122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++L+++++E++
  OBART08G09500.1 172 ELKHELKQGYKEKLIDIREEIL 193
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012564.6E-1469117IPR005541KNOX2
PfamPF037911.2E-1178116IPR005541KNOX2
PfamPF037891.8E-4172193IPR005539ELK domain
PROSITE profilePS5121310.039172192IPR005539ELK domain
SMARTSM011880.004172193IPR005539ELK domain
PROSITE profilePS5007111.742192255IPR001356Homeobox domain
SMARTSM003894.8E-11194259IPR001356Homeobox domain
SuperFamilySSF466892.52E-16194259IPR009057Homeodomain-like
CDDcd000866.71E-12195256No hitNo description
Gene3DG3DSA:1.10.10.603.5E-25199256IPR009057Homeodomain-like
PfamPF059207.0E-18212251IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAFHGHLPHE MTMQALDADD AAVAAAAAAG GVGAGGAPAW MRYNDGSFLH LQTTSDSSAS  60
PSGAAAAAAA AAAAAGTHYV LLLCSFKEQL QQHVRVHAME AVMACWELEQ NLQSLTGASP  120
GEGTGATMSD GEDDQADSEA NMYDPSLDGA DNMGFGLPTE SERSLMERVR QELKHELKQG  180
YKEKLIDIRE EILRKRRAGK LPGDTTSTLK AWWQSHAKWP YPTEEDKARL VQETGLQLKQ  240
INNWFINQRK RNWHSNPSSS TSVKTKRKSN AGDNNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13195259872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345870.0CT834587.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN088H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696167.11e-148PREDICTED: homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N41e-148KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0D3GYL10.0A0A0D3GYL1_9ORYZ; Uncharacterized protein
STRINGOBART08G09500.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-118KNOTTED1-like homeobox gene 3