PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G11780.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 244aa MW: 26762.4 Da PI: 8.4777

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G11780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPkti+++m+vkgLtl h+kSHLQkYRl OBART08G11780.1 32 KPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLFHLKSHLQKYRL 86 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.918	29	89	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-32	29	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.16E-16	32	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-24	32	87	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-8	34	85	IPR001005	SANT/Myb domain
Pfam	PF14379	5.8E-21	127	172	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MFPGLIHHHR LLDADGSGGG SSAGLVLTAD PKPRLRWTAD LHDRFVDAVA QLGGPDKATP 60 KTIMRTMGVK GLTLFHLKSH LQKYRLGKQS GKEMAEQSKD ASYLLGAQSG TNLSPTVPTP 120 DLKESQELKE ALRAQMEVQR KLHEQVEVQR HVQIRMEAYQ NYIDTLLEKA CNIVSEQLNG 180 FSISDHDLTS AGVMLSSSDT LSPSIFHQLS VSSISLHSPG GKSSPFAADA DLFFQKAPEK 240 RKSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	32	88	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103873	0.0	AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence.
GenBank	CT834232	0.0	CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650961.1	1e-165	protein PHR1-LIKE 3
Swissprot	Q8LAJ7	2e-67	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A0D3GZB5	1e-179	A0A0D3GZB5_9ORYZ; Uncharacterized protein
STRING	OBART08G11780.1	1e-180	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	4e-68	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]