PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G13190.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 328aa MW: 36204.2 Da PI: 8.173

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G13190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	54.6	2.6e-17	18	79	26	87
NF-YB 26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 k+++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++ OBART08G13190.1 18 KLARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQAAY 79 89******************************************************998654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	9.14E-24	11	123	IPR009072	Histone-fold
Pfam	PF00808	1.1E-13	13	63	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.8E-26	18	121	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDPMDIVGKS KEDVSLPKLA RDAQDLLVEC CVEFINLLSS ESNEVCSRED KKTIAPEHVL 60 RALQDLGFRE YIEEVQAAYE HHKHDTLDSP KASKFTGVEM TEEQAVAEQQ RMSQNLKRSS 120 KHNSYHSLSC TLNHSNPCSL NFSSIHNHNN SPHSCFLSNS CCILNRSKLR SLNFRSTLNH 180 SSPHSCNRNL SSTSNHSCPH NCSRNLSSPH NRSSPHSCSL NFSSILNHNN SPHSCSRNLS 240 SISNRSCSRS RRQSCNHSHN RKQNMAWTGP IRSQISLGLN PSTLAIQSPL PPSLSSLELE 300 ESGAVPATSG LSFLSHATAA LGRTGHCA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	3e-20	11	112	26	128	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF464902	1e-167	AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds.
GenBank	AK061580	1e-167	AK061580.1 Oryza sativa Japonica Group cDNA clone:006-311-H08, full insert sequence.
GenBank	AP005795	1e-167	AP005795.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1090H08.
GenBank	AP014964	1e-167	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CT830130	1e-167	CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D3GZR7	0.0	A0A0D3GZR7_9ORYZ; Uncharacterized protein
STRING	OBART08G13190.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.3	4e-55	nuclear factor Y, subunit B13