PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G13190.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 217aa    MW: 23829.7 Da    PI: 6.5027
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G13190.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB55.71.2e-1718792687
            NF-YB 26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
                     k+++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++  
  OBART08G13190.2 18 KLARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQAAY 79
                     89******************************************************998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.86E-2311114IPR009072Histone-fold
PfamPF008085.3E-141363IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.8E-2618112IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDPMDIVGKS KEDVSLPKLA RDAQDLLVEC CVEFINLLSS ESNEVCSRED KKTIAPEHVL  60
RALQDLGFRE YIEEVQAAYE HHKHDTLDSP KASKFTGVEM TEEQAVAEQQ RISILNHNNS  120
PHSCSRNLSS ISNRSCSRSR RQSCNHSHNR KQNMAWTGPI RSQISLGLNP STLAIQSPLP  180
PSLSSLELEE SGAVPATSGL SFLSHATAAL GRTGHCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-211111226128Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649021e-150AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds.
GenBankCT8301301e-150CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence.
GenBankCT8415641e-150CT841564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650908.14e-70protein Dr1 homolog isoform X2
SwissprotP495923e-51NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A0D3GZR81e-159A0A0D3GZR8_9ORYZ; Uncharacterized protein
STRINGOBART08G13190.11e-113(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.34e-55nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]